ScRAPdb

Species name	Strain name	Strain name fuzzy match
S. cerevisiae	1	1; CBK
S. cerevisiae	906	CPA; CPA_1a; 906
S. cerevisiae	908	908; BBM; BBM_1a
S. cerevisiae	1560	CPG; CPG_1a; 1560
S. cerevisiae	2281	2281; BBT
S. cerevisiae	2281	2281; BBT
S. cerevisiae	#36	BDC; BDC_1c; #36
S. cerevisiae	#57	BDF; BDF_1d; #57
S. cerevisiae	#59	BDH; BDH_1b; #59
S. cerevisiae	2-105	2_105
S. cerevisiae	21-4-116	ALS; ALS_1a; 21-4-116
S. cerevisiae	273614N	273614N; SACE_MAA
S. cerevisiae	273614N	273614N; SACE_MAA
S. cerevisiae	3	3; CBM
S. cerevisiae	3	3; CBM
S. cerevisiae	3	3; CBM
S. cerevisiae	4.5_WLP530	4.5_WLP530; CFC
S. cerevisiae	4.5_WLP530	4.5_WLP530; CFC
S. cerevisiae	6.2_WLP570	6.2_WLP570; CFF
S. cerevisiae	6.2_WLP570	6.2_WLP570; CFF
S. cerevisiae	6.2_WLP570	6.2_WLP570; CFF
S. cerevisiae	74-D694	74-D694; 74D694
S. cerevisiae	A-18	ANM; A-18
S. cerevisiae	A-18	ANM; A-18
S. cerevisiae	A-6	ANL; A-6
S. cerevisiae	A-6	ANL; A-6
S. cerevisiae	A20 Citrus	A20 Citrus; A20_Citrus
S. cerevisiae	AGY731	AGY731
S. cerevisiae	B-17	CAS; CAS_1a; B-17
S. cerevisiae	BAW-6	BAW6; BAW-6
S. cerevisiae	BC187	BC187
S. cerevisiae	biocodex	biocodex
S. cerevisiae	BJ20	BAK; BAK_1a; BJ20
S. cerevisiae	BJ4	BJ4
S. cerevisiae	BJ6	BAI; BAI_1a; BJ6
S. cerevisiae	BY	S288C; NCYC3608; BY; BY4741; BY4742
S. cerevisiae	BY4742	S288C; NCYC3608; BY; BY4741; BY4742
S. cerevisiae	C-6	CRL; C-6
S. cerevisiae	Cali_Ale	CaliAle
S. cerevisiae	CBS1394	AEL; CBS1394
S. cerevisiae	CBS1394	AEL; CBS1394
S. cerevisiae	CBS1394	AEL; CBS1394
S. cerevisiae	CBS1463	AIG; CBS1463
S. cerevisiae	CBS1489	ASG; CBS1489
S. cerevisiae	CBS1509	AFH; CBS1509
S. cerevisiae	CBS1586	AHG; CBS1586
S. cerevisiae	CBS2165a	AAC; CBS2165a
S. cerevisiae	CBS2165a	AAC; CBS2165a
S. cerevisiae	CBS2165a	AAC; CBS2165a
S. cerevisiae	CBS2183	AFI; CBS2183
S. cerevisiae	CBS2361	AGK; CBS2361
S. cerevisiae	CBS2807	AIC; CBS2807
S. cerevisiae	CBS2888	ABL; CBS2888; CBS2888_1b
S. cerevisiae	CBS2910	AIE; CBS2910
S. cerevisiae	CBS3012	AGA; AGA_1a; CBS3012
S. cerevisiae	CBS3081	AHL; CBS3081
S. cerevisiae	CBS422a	AAB; CBS422a
S. cerevisiae	CBS4255	ASB; CBS4255
S. cerevisiae	CBS4255	ASB; CBS4255
S. cerevisiae	CBS4255	ASB; CBS4255
S. cerevisiae	CBS457	AIF; CBS457
S. cerevisiae	CBS457	AIF; CBS457
S. cerevisiae	CBS457	AIF; CBS457
S. cerevisiae	CBS7539	AQG; AQG_2a; CBS7539
S. cerevisiae	CBS7962	AEG; CBS7962
S. cerevisiae	CBS7964	AEH; CBS7964
S. cerevisiae	CCY_21-4-102	BBF; CCY_21-4-102
S. cerevisiae	CCY_21-4-102	BBF; CCY_21-4-102
S. cerevisiae	CCY_21-4-102	BBF; CCY_21-4-102
S. cerevisiae	CECT10266	AVB; CECT10266
S. cerevisiae	CECT1462	ATV; CECT1462
S. cerevisiae	CECT1462	ATV; CECT1462
S. cerevisiae	CEN.PK_like	CEN.PK_like; CEN.PK; CEN.PKL
S. cerevisiae	CEN.PK113-7D	CENPK1137D; CEN.PK113-7D
S. cerevisiae	CEN.PK113-7D	CENPK1137D; CEN.PK113-7D
S. cerevisiae	CEY647	CQS; CQS_1a; CEY647
S. cerevisiae	CH02	AVN; CH02
S. cerevisiae	CH02	AVN; CH02
S. cerevisiae	CICC-1445	CICC1445
S. cerevisiae	Classic_Witbier	ClassicWitbier
S. cerevisiae	CLIB1071	BHH; CLIB1071
S. cerevisiae	CLIB219	ACQ; CLIB219; CLIB219_2b
S. cerevisiae	CLIB324	ADM; CLIB324_2
S. cerevisiae	CLIB324	ADM; CLIB324_2
S. cerevisiae	CLIB324	ADM; CLIB324_2
S. cerevisiae	CLIB382	AAR; CLIB382_1b; CLIB382
S. cerevisiae	CLIB413	ACG; CLIB413; CLIB413_1b
S. cerevisiae	CLIB483	ACH; CLIB483_1b; CLIB483
S. cerevisiae	CLIB561	BGN; BGN_3a; CLIB561
S. cerevisiae	CLIB562	BGP; BGP_1a; CLIB562
S. cerevisiae	CLIB630	ASN; CLIB630
S. cerevisiae	CLIB630	ASN; CLIB630
S. cerevisiae	CLIB630	ASN; CLIB630
S. cerevisiae	CLIB653	BEM; CLIB653
S. cerevisiae	CLIB653	BEM; CLIB653
S. cerevisiae	CLQCA_05-006	AKR; CLQCA_05-006
S. cerevisiae	CLQCA_05-006	AKR; CLQCA_05-006
S. cerevisiae	CLQCA_05-006	AKR; CLQCA_05-006
S. cerevisiae	CLQCA_17-111	CLQCA_17-111; CRE
S. cerevisiae	CLQCA_17-111	CLQCA_17-111; CRE
S. cerevisiae	CLQCA_19-011	ALH; ALH_1b; CLQCA_19-011; CLQCA_19-011_1b
S. cerevisiae	CLQCA_19-011	ALH; ALH_1c; CLQCA_19-011; CLQCA_19-011_1c
S. cerevisiae	CLQCA_20-060	ALI; CLQCA_20-060
S. cerevisiae	CLQCA_20-060	ALI; CLQCA_20-060
S. cerevisiae	CLQCA_20-060	ALI; CLQCA_20-060
S. cerevisiae	CLQCA_20-156	CCC; CCC_1a; CLQCA_20-156
S. cerevisiae	DBVPG1608	BLD; BLD_1a; DBVPG1608
S. cerevisiae	DBVPG1841	BPG; DBVPG1841
S. cerevisiae	DBVPG1861	BPK; DBVPG1861
S. cerevisiae	DBVPG1861	BPK; DBVPG1861
S. cerevisiae	DBVPG1861	BPK; DBVPG1861
S. cerevisiae	DBVPG6044	AKI; DBVPG6044
S. cerevisiae	DBVPG6044	AKI; DBVPG6044
S. cerevisiae	DBVPG6044	AKI; DBVPG6044
S. cerevisiae	DBVPG6765	DBVPG6765
S. cerevisiae	DGY1657	DGY1657
S. cerevisiae	DGY1728	DGY1728
S. cerevisiae	DGY1734	DGY1734
S. cerevisiae	DGY1736	DGY1736
S. cerevisiae	DGY1740	DGY1740
S. cerevisiae	DGY1744	DGY1744
S. cerevisiae	DGY1747	DGY1747
S. cerevisiae	DGY1751	DGY1751
S. cerevisiae	DJ71	BAD; DJ71
S. cerevisiae	DJ71	BAD; DJ71
S. cerevisiae	DJ74	BAF; DJ74
S. cerevisiae	DJ74	BAF; DJ74
S. cerevisiae	DJ74	BAF; DJ74
S. cerevisiae	Dji2-2A(a)	CFA; Dji2-2A(a)
S. cerevisiae	Dras_1	Dras1
S. cerevisiae	EM14S01-3B	CEG; EM14S013B; EM14S01-3B
S. cerevisiae	EM93_3	ACA; EM93_3; EM93
S. cerevisiae	EN14S01	AMH; AMH_1a; EN14S01
S. cerevisiae	English_Ale_II	EnglishAle2
S. cerevisiae	EXF-5871	BFH; EXF-5871
S. cerevisiae	EXF-5871	BFH; EXF-5871
S. cerevisiae	EXF-5871	BFH; EXF-5871
S. cerevisiae	EXF-7197	BFP; BFP_1a; EXF-7197
S. cerevisiae	FTPW4	CPS; FTPW4
S. cerevisiae	FTPW4	CPS; FTPW4
S. cerevisiae	GE14S01-7B	CEI; CEI_1a; GE14S01-7B
S. cerevisiae	GLBRCY22-3	GLBRCY223; Y22-3
S. cerevisiae	Halvorsgard_3	Halvorsgard3
S. cerevisiae	HE006	BCE; BCE_3a; HE006
S. cerevisiae	HE015	BCN; HE015
S. cerevisiae	HJ	HJ
S. cerevisiae	HLJ1	HLJ1
S. cerevisiae	HN1	HN1
S. cerevisiae	HN10	BAM; HN10
S. cerevisiae	HN16	BAP; BAP_1a; HN16
S. cerevisiae	HN19	BAQ; BAQ_1a; HN19
S. cerevisiae	HN6	BAL; BAL_1a; HN6
S. cerevisiae	I-30	I-30; I30
S. cerevisiae	I-329	I-329; I329
S. cerevisiae	I14	ACS; I14; I14_1b
S. cerevisiae	IMB-53	BBL; IMB-53
S. cerevisiae	IMDO050523	IMDO050523
S. cerevisiae	IMF17	IMF17
S. cerevisiae	IMX2600	IMX2600
S. cerevisiae	INSC1005	INSC1005
S. cerevisiae	INSC1006	CEN.PK2-1D; INSC1006; CENPK21D
S. cerevisiae	IR-2idA30a	IR-2idA30a; IR-2idA30
S. cerevisiae	IT-CXT_S18	IT_CXT_S18; IT-CXT_S18
S. cerevisiae	IT-CXV_S20	IT_CXV_S20; IT-CXV_S20
S. cerevisiae	IT-CXW_S21	IT_CXW_S21; IT-CXW_S21
S. cerevisiae	IT-CXX_S22	IT_CXX_S22; IT-CXX_S22
S. cerevisiae	IT-DBJ_S1	IT_DBJ_S1; IT-DBJ_S1
S. cerevisiae	IT-DBK_S2	IT_DBK_S2; IT-DBK_S2
S. cerevisiae	IT-DBL_S3	IT_DBL_S3; IT-DBL_S3
S. cerevisiae	IT-DBM_S4	IT_DBM_S4; IT-DBM_S4
S. cerevisiae	IT-DBQ_S8	IT_DBQ_S8; IT-DBQ_S8
S. cerevisiae	IT-DBR_S9	IT_DBR_S9; IT-DBR_S9
S. cerevisiae	IT-DBU_S12	IT_DBU_S12; IT-DBU_S12
S. cerevisiae	JCM_3529-7B	CEL; CEL_1a; JCM_3529-7B
S. cerevisiae	Jean-Talon	JeanTalon
S. cerevisiae	JH301	JH301
S. cerevisiae	JXXY16.1	JXXY161; JXXY16.1
S. cerevisiae	K10	CLL; K10
S. cerevisiae	K10	CLL; K10
S. cerevisiae	K10	CLL; K10
S. cerevisiae	K12	ADQ; K12_2; K12
S. cerevisiae	K14	CLN; K14
S. cerevisiae	Kagoshima no. 2	Kagoshima2; Kagoshima no. 2
S. cerevisiae	KCCM51299	KCCM51299; Rey36-3
S. cerevisiae	KMLY1-2	KMLY1-2;KMLY1_2
S. cerevisiae	Ksc2-2B	CCQ; CCQ_1a; Ksc2-2B
S. cerevisiae	KSD-Yc	KSDYc; KSD-Yc
S. cerevisiae	KTP	KTP
S. cerevisiae	L-1374	L1374; L-1374; NCYC3623
S. cerevisiae	L-1374	L1374; L-1374; NCYC3623
S. cerevisiae	L1528	L1528; L-1528; SACE_GAP
S. cerevisiae	LCBG-3D6	CPI; CPI_1c; LCBG-3D6
S. cerevisiae	LL2013_040	LL2013_040
S. cerevisiae	LL2013_054	LL2013_054
S. cerevisiae	LW2591Y	LW2591Y
S. cerevisiae	LY0215	LY0215; LY0215-S
S. cerevisiae	LZLJ_A	LZLJ_A
S. cerevisiae	M22	ADR; M22; M22_1b
S. cerevisiae	MAJ_A	BDM; BDM_1a; MAJ_A
S. cerevisiae	MAJ_G	BDN; BDN_1c; MAJ_G
S. cerevisiae	malade 98 1655/125391	CKB; malade 98 1655/125391
S. cerevisiae	malade 98 1655/125391	CKB; malade 98 1655/125391
S. cerevisiae	malade 98 1655/125391	CKB; malade 98 1655/125391
S. cerevisiae	Marem_1	Marem1
S. cerevisiae	Marina_1	Marina1
S. cerevisiae	MC9	AIS
S. cerevisiae	MC9	AIS
S. cerevisiae	MC9	AIS
S. cerevisiae	MTF2552	CQI; CQI_4a; MTF2552
S. cerevisiae	MUCL_30909-2C	CEQ; CEQ_1a; MUCL_30909-2C
S. cerevisiae	N3.00-7A	CDG; CDG_1a; N3.00-7A
S. cerevisiae	N85	N85
S. cerevisiae	NC_02	NC_02; NC_02_b; ADG
S. cerevisiae	NPA02-1	AKH; AKH_1a; NPA02-1
S. cerevisiae	NRRL Y-567	NRRL Y-567; Y-567; Y567
S. cerevisiae	PB12	PB12; CIH
S. cerevisiae	PB12	PB12; CIH
S. cerevisiae	PB12	PB12; CIH
S. cerevisiae	PD15A	PD15A; K292
S. cerevisiae	PD21B	PD21B; NX4
S. cerevisiae	PD27A	PD27A; K144
S. cerevisiae	PD28A	PD28A; K163
S. cerevisiae	PD31A	PD31A; K212
S. cerevisiae	PD33A	PD33A; K227
S. cerevisiae	PD35A	PD35A; K292
S. cerevisiae	PD36A	PD36A; K296
S. cerevisiae	PD38A	PD38A; K298
S. cerevisiae	PD40A	PD40A; K321
S. cerevisiae	PD41A	PD41A; DSP-C2
S. cerevisiae	PE-2_H3	PE-2_H3; PE2_H3
S. cerevisiae	PE-2_H4	PE-2_H4; PE2_H4
S. cerevisiae	Ponton 11	CIC; Ponton 11
S. cerevisiae	Ponton 11	CIC; Ponton 11
S. cerevisiae	Ponton 11	CIC; Ponton 11
S. cerevisiae	PW5	ADE; PW5_b; PW5
S. cerevisiae	PW5	ADE; PW5_b; PW5
S. cerevisiae	PY0001	PY0001
S. cerevisiae	Rakstins_1	Rakstins1
S. cerevisiae	RG06	RG06; PT2204
S. cerevisiae	RIB6001	CMF; RIB6001
S. cerevisiae	RIB6001	CMF; RIB6001
S. cerevisiae	RIB6001	CMF; RIB6001
S. cerevisiae	RM	RM
S. cerevisiae	RM11	AAA; RM11; RM11-1a
S. cerevisiae	RP11.4.11	CNT; RP11.4.11
S. cerevisiae	RP11.4.11	CNT; RP11.4.11
S. cerevisiae	RP11.4.11	CNT; RP11.4.11
S. cerevisiae	S10	S10; SPA0084
S. cerevisiae	S11F3-6B	CCT; CCT_1a; S11F3-6B
S. cerevisiae	S13	S13; SPA0107
S. cerevisiae	S14	S14; SPA0108
S. cerevisiae	S16	S16; SPA0138
S. cerevisiae	S288C	S288C; NCYC3608; BY; BY4741; BY4742
S. cerevisiae	S288C	S288C; NCYC3608; BY; BY4741; BY4742
S. cerevisiae	S288C	S288C; NCYC3608; BY; BY4741; BY4742
S. cerevisiae	S288C	S288C; NCYC3608; BY; BY4741; BY4742
S. cerevisiae	S5	S5; SPA0048
S. cerevisiae	S7	S7; SPA0050
S. cerevisiae	S799	S799
S. cerevisiae	S8	S8; SPA0080
S. cerevisiae	S8BM-32-4D(a)	CDA; S8BM-32-4D(a); S8BM-32; S8BM-32-4D
S. cerevisiae	SC 32 F. Dromer IP	CHS; CHS_3a; SC 32 F. Dromer IP
S. cerevisiae	SC2-37	CRB; CRB_1a; SC2-37
S. cerevisiae	SC98-5	SC985; SC98-5
S. cerevisiae	SDO2s1	SDO2s1
S. cerevisiae	SJ5L12	AMM; AMM_1a; SJ5L12
S. cerevisiae	SJ5L14	AMP; AMP_1a; SJ5L14
S. cerevisiae	SK1	SK1; SACE_GAL
S. cerevisiae	Skare_1	Skare1
S. cerevisiae	SM.8.2.C13	CNB; CNB_1a; SM.8.2.C13
S. cerevisiae	SPA0342	SPA0342; SPA0342-1H
S. cerevisiae	SPA0344	SPA0344; SPA0344-7H
S. cerevisiae	SR18	SR18; FS29
S. cerevisiae	Stordal_Ebbegarden_1	StordalEbbegarden1
S. cerevisiae	Suomen_Hiiva	SuomenHiiva
S. cerevisiae	SX1	BAG; BAG_1a; SX1
S. cerevisiae	SX2	SX2
S. cerevisiae	SX3	BAH; SX3
S. cerevisiae	SY14	SY14
S. cerevisiae	T73	ADS; T73_1b
S. cerevisiae	Tinn_1	Tinn1
S. cerevisiae	U-1A-D1628	U1AD1628; U-1A-D1628
S. cerevisiae	Uberweizen	Uberweizen
S. cerevisiae	UC10	ATM_1a; ATM; UC10
S. cerevisiae	UCD_40-255	CFS; UCD_40-255
S. cerevisiae	UCD_61-190-6A	CDN; CDN_1a; UCD_61-190-6A
S. cerevisiae	unique28	unique28
S. cerevisiae	US-05	US-05; US_05; US05
S. cerevisiae	UWOPS03-433.3	BMB; UWOPS03-433.3
S. cerevisiae	UWOPS03-459.1	BMC; BMC_2a; UWOPS03-459.1
S. cerevisiae	UWOPS03-461.4	UWOPS034614; UWOPS03-461.4; AKM
S. cerevisiae	UWOPS05-227.2	UWOPS052272; UWOPS05-227.2; SACE_MAL; UWOPS05_227_2; UWOPS05-227_2
S. cerevisiae	UWOPS83-787.3	UWOPS837873; UWOPS83-787.3; SACE_GAS; UWOPS83_787_3; UWOPS83-787_3
S. cerevisiae	UWOPS83-787.3	UWOPS837873; UWOPS83-787.3; SACE_GAS; UWOPS83_787_3; UWOPS83-787_3
S. cerevisiae	UWOPS87.2421	UWOPS872421; UWOPS87.2421; UWOPS87_2421;SACE_GAT
S. cerevisiae	VF8_(6)	APG; VF8_(6)
S. cerevisiae	VKM_Y-504:S	CCN; VKM_Y-504:S
S. cerevisiae	VNL3	CGH; CGH_1; VNL3; VNL3_1
S. cerevisiae	VNL3	CGH; CGH_1; VNL3; VNL3_1
S. cerevisiae	VNL3	CGH; CGH_3; VNL3; VNL3_3
S. cerevisiae	VNL3	CGH; CGH_3; VNL3; VNL3_3
S. cerevisiae	Voss_I	Voss1
S. cerevisiae	W303	W303; W303_1a; 9464; SACE_GAV
S. cerevisiae	W303	W303; W303_1a; 9464; SACE_GAV
S. cerevisiae	Weizen_I	Weizen1
S. cerevisiae	XI06	XI06; SPA0305-1-S
S. cerevisiae	XP	XP
S. cerevisiae	XXYS1.4	XXYS14; XXYS1.4
S. cerevisiae	Y10	ACI; Y10; Y10_1b
S. cerevisiae	Y12	ACK; Y12; Y12_1b
S. cerevisiae	Y12	ACK; Y12; Y12_1b
S. cerevisiae	Y12	ACK; Y12; Y12_1b
S. cerevisiae	Y2805	Y2805
S. cerevisiae	Y55_1b	ADA; Y55; Y55_1b; NCYC3613;
S. cerevisiae	Y55_1b	ADA; Y55; Y55_1b; NCYC3613
S. cerevisiae	YAF064	YAF064
S. cerevisiae	YAL1	YAL1
S. cerevisiae	YIIc17_E5	YIIc17E5; YIIc17_E5
S. cerevisiae	YJM145	AAS; YJM145; YJM145_b
S. cerevisiae	YJM311	YJM311; YJM311_HP1
S. cerevisiae	YJM311	YJM311; YJM311_HP2
S. cerevisiae	YJM326	ABA; YJM326_b; YJM326
S. cerevisiae	YJM454	ABH; YJM454_1b; YJM454
S. cerevisiae	YJM454	ABH; YJM454_1b; YJM454
S. cerevisiae	YJM975	SACE_YBA; YJM975
S. cerevisiae	YJM978	SACE_YBB; YJM978
S. cerevisiae	YJM981	ADI; YJM981_b; YJM981
S. cerevisiae	YJM981	ADI; YJM981_b; YJM981
S. cerevisiae	YJM981	ADI; YJM981_b; YJM981
S. cerevisiae	YPH499	YPH499
S. cerevisiae	YPS1009	ADF; YPS1009; YPS1009_b
S. cerevisiae	YPS128	AKN; YPS128
S. cerevisiae	YPS134	ANE; YPS134
S. cerevisiae	YPS163	ACD; AVI; AVI_1a; AVI_1b; YPS163; YPS163_1b; YPS163_1a
S. cerevisiae	YPS163	ACD; AVI; AVI_1a; AVI_1b; YPS163; YPS163_1b; YPS163_1a
S. cerevisiae	YPS606	NCYC3631; YPS606
S. cerevisiae	YPS606	NCYC3631; YPS606
S. cerevisiae	YS8(E)	BTE; YS8(E)
S. cerevisiae	YS8(E)	BTE; YS8(E)
S. cerevisiae	ZP568s1	ZP568s1
S. cerevisiae	ZP655.1A	ZP655.1A; ZP655_1A
S. arboricola	H6	H6; CBS10644
S. chiloensis sp. nov AUS	ZP964	ZP964
S. chiloensis sp. nov AUS	ZP966	ZP966
S. chiloensis sp. nov SA-C	CBS18620	CBS18620; CL1206
S. chiloensis sp. nov SA-C	CL1207	CL1207
S. chiloensis sp. nov SA-C	CL1603	CL1603
S. chiloensis sp. nov SA-C	CL1604	CL1604
S. eubayanus	CL216.1	CL216; CL216.1
S. eubayanus	CL450.1	CL450; CL450.1
S. eubayanus	FM1318	FM1318; CBS12357; PYCC6148; CRUB1568
S. eubayanus	UCD646	UCD646
S. eubayanus	UCD650	UCD650
S. jurei	NCYC3947	NCYC3947
S. jurei	NCYC3962	NCYC3962
S. kudriavzevii	CR85	CR85
S. kudriavzevii	IFO1802	IFO1802
S. kudriavzevii	ZP591	ZP591
S. mikatae	IFO1815	IFO1815; NCYC2888
S. mikatae	IFO1815	IFO1815; NCYC2888
S. mikatae	NBRC10994	NBRC10994
S. paradoxus	CBS432	CBS432
S. paradoxus	DG1768	DG1768
S. paradoxus	LL2011_012	LL2011_012
S. paradoxus	LL2012_001	LL2012_001
S. paradoxus	LL2012_016	LL2012_016
S. paradoxus	MSH-604	MSH604; MSH-604
S. paradoxus	N44	N44
S. paradoxus	R23	R23
S. paradoxus	UFRJ50816	UFRJ50816
S. paradoxus	UWOPS91-917.1	UWOPS919171; UWOPS91-917.1
S. paradoxus	WX20	WX20
S. paradoxus	YPS138	YPS138
S. uvarum	CBS7001	CBS7001; MCYC623; NRRL_Y11845; NRRL Y-11845
S. uvarum	CBS7001	CBS7001; MCYC623; NRRL_Y11845; NRRL Y-11845
S. uvarum	CBS7001	CBS7001; MCYC623; NRRL_Y11845; NRRL Y-11845
S. uvarum	NRRL_Y-11845	NRRL_Y11845; NRRL Y-11845; YJF4719; CBS7001;

Geographical_Origin	Schleswig-Holstein, Germany
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125905.1; GCA_949122605.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Mexico
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	12. Mexican distillery/agave
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124875.1; GCA_949121565.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Jalisco, Mexico
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	12. Mexican distillery/agave
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124755.1; GCA_949123765.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Aceituna, Spain
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	02. Alpechin
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125375.1; GCA_949122055.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Valdevimbre, Spain
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124495.1; GCA_949123015.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Valdevimbre, Spain
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122205.1; GCA_949123015.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Evolution canyon, Israel
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	+2*chrI
Phylogenetic_Clade	19. Isreal evolution canyon
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124805.1; GCA_949123805.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Evolution canyon, Israel
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	19. Isreal evolution canyon
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124565.1; GCA_949122565.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Evolution canyon, Israel
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	06. Mosiac 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124685.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Debrecen, Hungary
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA992067
Original_Assembly_Accession	GCA_030607045.1
Sequencing_Technology	ONT MinION; Illumina NextSeq
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Male levare, Slovakia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124125.1; GCA_949122445.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Royal Victoria Infirmary, Newcastle UK
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	06. Mosiac 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ho∆::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029703145.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Royal Victoria Infirmary, Newcastle UK
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	06. Mosiac 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	Forest of Nehmten, Schleswig-Holstein, Germany
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125735.1; GCA_949123165.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Forest of Nehmten, Schleswig-Holstein, Germany
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122525.1; GCA_949123165.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Forest of Nehmten, Schleswig-Holstein, Germany
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121635.1; GCA_949123165.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Westmalle, Belgium
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1*chrXII
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125035.1; GCA_949123145.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Westmalle, Belgium
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1*chrXII
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122505.1; GCA_949123145.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Belgium
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125025.1; GCA_949121865.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Belgium
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123105.1; GCA_949121865.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Belgium
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123195.1; GCA_949121865.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ade1-14(UGA) trp1-289(UAG) ura3-52 his3-Δ200 leu2-3,112 flo8-1 [psi-] [PIN+]
Extra_Notes	Commonly used for the study of the yeast [PSI+]
Original_Bioproject_Accession	PRJNA656310
Original_Assembly_Accession	GCA_014898935.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2021
Author	Barbitoff, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage.
DOI	10.1093/g3journal/jkab029

Geographical_Origin	Ghana
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124205.1; GCA_949122775.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ghana
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123435.1; GCA_949122775.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ghana
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124415.1; GCA_949122165.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ghana
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122235.1; GCA_949122165.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	USA
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA706006
Original_Assembly_Accession	GCA_019155725.1
Sequencing_Technology	ONT MinION; Illumina iSeq 100
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ::HphMX
Extra_Notes	YPS1009-derived
Original_Bioproject_Accession	PRJNA984736
Original_Assembly_Accession	GCA_030866685.1
Sequencing_Technology	ONT Flongle; Illumina MiSeq
Year	2024
Author	Rojas, et al.
Journal	BioRxiv
Title	Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model.
DOI	10.1101/2024.04.09.588778

Geographical_Origin	Georgia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125665.1; GCA_949121885.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJDB6735
Original_Assembly_Accession	GCA_002933895.1; GCA_949124085.1
Sequencing_Technology	PacBio RSII; Illumina MiSeq
Year	2018
Author	Kajiwara, et al.
Journal	Genome Announcements
Title	Genomic sequence of Saccharomyces cerevisiae BAW-6, a yeast strain optimal for brewing barley shochu
DOI	10.1128/genomeA.00228-18

Geographical_Origin	California, USA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	NA
Aneuploidy_Status	+1*chrXII
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA259301
Original_Assembly_Accession	GCA_001298375.2
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 2500
Year	2017
Author	Khatri, et al.
Journal	Scientific Reports
Title	Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii.
DOI	10.1038/s41598-017-00414-2

Geographical_Origin	Dongling Mountain, Beijing, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	37. Far East Asian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124465.1; GCA_949123415.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Haidian, Beijing, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819145.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	Changping, Beijing, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	37. Far East Asian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124515.1; GCA_949122735.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	SUC2 gal2 mal2 mel flo1 flo8-1 hap1 ho bio1 bio6
Extra_Notes	Monosporic isolate derived from the BY4716 x BY4700 cross
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702615.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	his3Δ1 leu2Δ0 lys2Δ0 ura3Δ0
Extra_Notes	BY4742 is part of a set of deletion strains derived from S288C in which commonly used selectable marker genes were deleted by design in order to minimize or eliminate homology to the corresponding marker genes in commonly used vectors without significantly affecting adjacent gene expression. The yeast strains were all directly descended from FY2, which is itself a direct descendant of S288C. Variation between BY4742 and S288C is miniscule. BY4742 was used as a parent strain for the international systematic Saccharomyces cerevisiae gene disruption project.
Original_Bioproject_Accession	PRJNA429985
Original_Assembly_Accession	GCA_003086655.1
Sequencing_Technology	PacBio Sequel; Illumina MiSeq
Year	2018
Author	Shao, et al.
Journal	Nature
Title	Creating a functional single-chromosome yeast.
DOI	10.1038/s41586-018-0382-x

Geographical_Origin	Georgia
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB39456; PRJEB13017
Original_Assembly_Accession	GCA_949125125.1; GCA_949121805.1
Sequencing_Technology	ONT MinION R9.3; Illumina HiSeq 2000
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	USA
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1chrV; +2chrVIII_complex
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124135.1; GCA_949123505.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1chrV; +2chrVIII_complex
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123825.1; GCA_949123505.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1chrV; +2chrVIII_complex
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123955.1; GCA_949123505.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124105.1; GCA_949123605.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Italy
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+2chrII; +1chrIII_complex; +1chrVIII; +1chrX
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124595.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124075.1; GCA_949122695.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	+1*chrX_complex
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124395.1; GCA_949121735.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	England, UK
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124335.1; GCA_949123375.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	England, UK
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122535.1; GCA_949123375.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	England, UK
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123255.1; GCA_949123375.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Chateau Chalon, France
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124405.1; GCA_949123555.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	UK
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124045.1; GCA_949122715.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Slovakia
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124365.1; GCA_949123115.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	South Africa
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ho∆::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029703195.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Portugal
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	+1*chrIX
Phylogenetic_Clade	02. Alpechin
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124095.1; GCA_949122315.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Cadiz, Spain
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+3chrI; +2chrVIII_complex
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124245.1; GCA_949122865.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Spain
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	02. Alpechin
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124345.1; GCA_949122285.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Odessa, Ukraine
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124225.1; GCA_949123995.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+2*chrIX_complex
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124545.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+2*chrIX_complex
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121555.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+2*chrIX_complex
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122135.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1chrXI_complex; +1chrXVI_complex
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124435.1; GCA_949122345.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1chrXI_complex; +1chrXVI_complex
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123985.1; GCA_949122345.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1chrXI_complex; +1chrXVI_complex
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121775.1; GCA_949122345.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Plovdiv, Bulgaria
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124765.1; GCA_949122335.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124055.1; GCA_949123485.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124265.1; GCA_949122755.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Bratislava, Slovakia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124735.1; GCA_949124085.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Bratislava, Slovakia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123515.1; GCA_949124085.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Bratislava, Slovakia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123975.1; GCA_949124085.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Spain
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	02. Alpechin
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124775.1; GCA_949122495.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	UK
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124625.1; GCA_949122245.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	UK
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123835.1; GCA_949122245.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ SUC2, MAL2-8c flo1 flo5 flo9
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA588095
Original_Assembly_Accession	GCA_016858175.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	NA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	URA3 HIS3 LEU2 TRP1 MAL2-8c SUC2
Extra_Notes	CEN.PK113-7D is a popular haploid strain for metabolic engineering and systems biology research.
Original_Bioproject_Accession	PRJNA398797; SRP012047
Original_Assembly_Accession	CP022966-CP022981; CP022982
Sequencing_Technology	PacBio Sequel; ONT MinION R9.5; Illumina GA
Year	2018
Author	Jenjaroenpun, et al.
Journal	Nucleic Acids Research
Title	Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D.
DOI	10.1093/nar/gky014

Geographical_Origin	NA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	URA3 HIS3 LEU2 TRP1 MAL2-8c SUC2
Extra_Notes	CEN.PK113-7D is a popular haploid strain for metabolic engineering and systems biology research.
Original_Bioproject_Accession	PRJNA393501
Original_Assembly_Accession	GCA_002571405.2
Sequencing_Technology	ONT MinION R7.3/R9; Illumina HiSeq 2500
Year	2017
Author	Salazar, et al.
Journal	FEMS Yeast Research
Title	Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D.
DOI	10.1093/femsyr/fox074

Geographical_Origin	French Guiana
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124895.1; GCA_949121875.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Abengourou, Côte d'Ivoire
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124485.1; GCA_949123565.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Abengourou, Côte d'Ivoire
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122215.1; GCA_949123565.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	China
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA792931
Original_Assembly_Accession	GCA_023508825.1
Sequencing_Technology	PacBio Sequel
Year	2022
Author	Zhang, et al.
Journal	Briefings in Bioinformatics
Title	Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
DOI	10.1093/bib/bbac146

Geographical_Origin	Belgium/Germany
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Lower Normandy, France
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB14774
Original_Assembly_Accession	GCA_949124695.1; GCA_949121855.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Russia
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	37. Far East Asian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029703415.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124375.1; GCA_949122745.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123905.1; GCA_949122745.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121915.1; GCA_949122745.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ireland
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	10. Mosaic beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124305.1; GCA_949122355.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	China
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	05. Mosiac 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ho∆::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702885.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Brittany, France
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	05. Mosiac 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124295.1; GCA_949122395.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Normandy, France
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124675.1; GCA_949123875.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Normandy, France
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124655.1; GCA_949123895.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Normandy, France
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124585.1; GCA_949122275.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Normandy, France
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123005.1; GCA_949122275.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Normandy, France
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121655.1; GCA_949122275.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Chad
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124795.1; GCA_949123775.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Chad
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123935.1; GCA_949123775.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Guayas, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124165.1; GCA_949122435.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Guayas, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121945.1; GCA_949122435.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Guayas, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122005.1; GCA_949122435.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ecuador
Ecological_Origin	Wild
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125295.1; GCA_949121955.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ecuador
Ecological_Origin	Wild
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123125.1; GCA_949121955.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Napo, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124175.1; GCA_949122455.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Napo, Ecuador
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124385.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yasuni National Park, Orellana, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	11. French Guiana human
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124195.1; GCA_949122325.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yasuni National Park, Orellana, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	11. French Guiana human
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122675.1; GCA_949122325.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yasuni National Park, Orellana, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	11. French Guiana human
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121605.1; GCA_949122325.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yasuni, Orellana, Ecuador
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	26. American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124955.1; GCA_949122045.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	La Mancha, Spain
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124555.1; GCA_949123735.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ethiopia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124845.1; GCA_949124015.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Rajamaki River, Finland
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124965.1; GCA_949121795.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Rajamaki River, Finland
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123385.1; GCA_949121795.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Rajamaki River, Finland
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123965.1; GCA_949121795.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	West Africa
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ura3::KanMX lys2::URA3 ho::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002079025.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	West Africa
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ura3::KanMX lys2::URA3 ho::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192285.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	West Africa
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA360861
Original_Assembly_Accession	GCA_002271905.1
Sequencing_Technology	PacBio RSII P6-C2
Year	2017
Author	Kim, et al.
Journal	eLife
Title	The dynamic three-dimensional organization of the diploid yeast genome
DOI	10.7554/eLife.23623

Geographical_Origin	Europe
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ura3::KanMX lys2::URA3 ho::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002057805.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBG000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBF000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBE000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBD000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBC000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBB000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQBA000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	USA
Ecological_Origin	Evolved
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hem1 erg::URA3 leu2 ade2 ura3 his4 ACT1pr::mCitrine::ADH1term TEFpr::KanMX::TEFterm
Extra_Notes	Dervied from S288C; Evovled for higher tolerance to glutamine-deficiency
Original_Bioproject_Accession	PRJNA843341
Original_Assembly_Accession	JAMQAZ000000000
Sequencing_Technology	ONT MinION R9.4; Illumina NextSeq 500
Year	2022
Author	Spealman, et al.
Journal	Microbiology Resource Announcements
Title	Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations.
DOI	https://doi.org/10.1128/mra.00729

Geographical_Origin	Yoboki, Djibouti
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	33. Indian ocean islands
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125245.1; GCA_949123215.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yoboki, Djibouti
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	33. Indian ocean islands
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123715.1; GCA_949123215.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yoboki, Djibouti
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124855.1; GCA_949123625.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yoboki, Djibouti
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123695.1; GCA_949123625.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Yoboki, Djibouti
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123945.1; GCA_949123625.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Djibouti
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB14774
Original_Assembly_Accession	GCA_949124865.1; GCA_949122475.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Drąseikiai, Aukštaitija, Lithuania
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R10.3
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	40. Taiwanese 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819205.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	California, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB39456; PRJEB13017
Original_Assembly_Accession	GCA_949124315.1; GCA_949123345.1
Sequencing_Technology	ONT MinION R9.3; Illumina HiSeq 2000
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Sinyi, Nantou, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	40. Taiwanese 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124155.1; GCA_949122225.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	UK
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Slovenia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124705.1; GCA_949127785.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Slovenia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123585.1; GCA_949127785.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Slovenia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	07. French dairy
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122065.1; GCA_949127785.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Montenegro
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	09. Mediterranean oak
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124665.1; GCA_949123845.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Burkina Faso
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125785.1; GCA_949122105.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Burkina Faso
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123795.1; GCA_949122105.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	40. Taiwanese 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124885.1; GCA_949123535.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Costa Rica
Ecological_Origin	Engineered
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	21. Mosiac 5
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ::ScTAL1-CpxylA-SsXYL3-loxP-KanMX-loxP
Extra_Notes	Derived from the stress-tolerant wild strain NRRL YB-210 and subsequently engineered for xylose metabolism
Original_Bioproject_Accession	PRJNA279877
Original_Assembly_Accession	GCA_001634645.1
Sequencing_Technology	PacBio RSII P4-C2; Illumina HiSeq
Year	2016
Author	McIlwain, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Genome sequence and analysis of a Stress-tolerant, wild-derived strain of Saccharomyces cerevisiae used in biofuels research.
DOI	10.1534/g3.116.029389

Geographical_Origin	Al, Hallingdal, Norway
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	French Guiana
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	11. French Guiana human
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124745.1; GCA_949123815.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	French Guiana
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	11. French Guiana human
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124525.1; GCA_949123495.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Zhejiang, China
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA635238
Original_Assembly_Accession	GCA_015363515.1
Sequencing_Technology	PacBio
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Jinbo lake, Heilongjiang, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	37. Far East Asian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819155.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	Diaoluo Mountain, Hainan, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	38. CHN I
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819125.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	Wuzhi Mountain, Hainan, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	36. CHN III
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124505.1; GCA_949123085.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Wuzhi Mountain, Hainan, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124535.1; GCA_949123925.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Wuzhi Mountain, Hainan, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	36. CHN III
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124725.1; GCA_949122575.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Bawangling Mountain, Hainan, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	38. CHN I
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124715.1; GCA_949123785.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Russia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA414946
Original_Assembly_Accession	GCA_003046695.1
Sequencing_Technology	PacBio RSII; Illumina HiSeq 2500
Year	2018
Author	Eldarov, et al.
Journal	Frontiers in Microbiology
Title	Whole-Genome Analysis of Three Yeast Strains Used for Production of Sherry-Like Wines Revealed Genetic Traits Specific to Flor Yeasts
DOI	10.3389/fmicb.2018.00965

Geographical_Origin	Russia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA414946
Original_Assembly_Accession	GCA_003046695.1
Sequencing_Technology	PacBio RSII; Illumina HiSeq 2500
Year	2018
Author	Eldarov, et al.
Journal	Frontiers in Microbiology
Title	Whole-Genome Analysis of Three Yeast Strains Used for Production of Sherry-Like Wines Revealed Genetic Traits Specific to Flor Yeasts
DOI	10.3389/fmicb.2018.00965

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	03. Mosiac 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ho∆::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702955.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Platanus orientalis forest, Belasista Mountain (near Kamena Village), Bulgaria
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1chrV; +1chrVIII; +1chrIX; +1chrXII; +1*chrXIV
Phylogenetic_Clade	34. Northern Eurasian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124645.1; GCA_949123075.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ghana
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB46227
Original_Assembly_Accession	GCA_932563355.1
Sequencing_Technology	ONT MinION R9.4.1
Year	2022
Author	Díaz-Muñoz, et al.
Journal	iScience
Title	Phylogenomics of a Saccharomyces cerevisiae cocoa strain reveals adaptation to a West African fermented food population.
DOI	10.1016/j.isci.2022.105309

Geographical_Origin	Netherlands
Ecological_Origin	Engineered
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ura3-52 his3-1 leu2-3,112 MAL2-8c SUC2 glk1Δ::(pAgTEF1- SpHIS5-tAgTEF1)Δ::(pGAL1-I SceI-tCYC1) hxk1Δ::KlLEU2 tdh1Δ tdh2Δ gpm2Δ gpm3Δ eno1Δ pyk2Δ pdc5Δ pdc6Δ adh2Δ adh5Δ adh4Δ sga1Δ pyk1Δ pgi1Δ tpi1Δ tdh3Δ pfk2Δ::(pTEF1-Spcas9- tCYC1 natNT1) pgk1Δ gpm1Δ fba1Δ hxk2Δ pfk1Δ adh1Δ pdc1Δ eno2Δ NeoChr15
Extra_Notes	CEN.PK background
Original_Bioproject_Accession	PRJNA596648
Original_Assembly_Accession	GCA_018219195.1
Sequencing_Technology	ONT MinION; Illumina MiSeq
Year	2021
Author	Postma, et al.
Journal	Nucleic Acids Research
Title	A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae.
DOI	10.1093/nar/gkaa1167

Geographical_Origin	Delft, Netherlands
Ecological_Origin	Engineered
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	MAL2-8c SUC2 can1delta::Spycas9-natNT2
Extra_Notes	Derived from CEN.PK113-7D; Used in constructing several microbial cell factories
Original_Bioproject_Accession	PRJNA976676
Original_Assembly_Accession	CP127195.1-CP127211.1
Sequencing_Technology	ONT MinION; Illumina MiSeq
Year	2024
Author	van den Broek, et al.
Journal	Microbiology Resource Announcements
Title	Draft genome sequence of the Saccharomyces cerevisiae Spy Cas9 expressing strain IMX2600, a laboratory and platform strain from the CEN.PK lineage for cell-factory research
DOI	10.1128/mra.00550-23

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	SUC2 gal2 mal2 mel flo1 flo8-1 hap1 ho bio1 bio6 ura3 nej1::URA3
Extra_Notes	Derived from S288C
Original_Bioproject_Accession	PRJNA588095
Original_Assembly_Accession	GCA_010356925.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	his3D1 leu2-3_112 ura3-52 trp1-289 MAL2-8c SUC2
Extra_Notes
Original_Bioproject_Accession	PRJNA588095
Original_Assembly_Accession	GCA_010356935.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Indonesia
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ::kanMX
Extra_Notes	Derived from IR-2
Original_Bioproject_Accession	PRJDB7860
Original_Assembly_Accession	GCA_004359125.1
Sequencing_Technology	PacBio RSII; IonTorrent PGM
Year	2019
Author	FujiMori, et al.
Journal	Microbiology Resource Announcements
Title	Whole-Genome Sequence of an Isogenic Haploid Strain, Saccharomyces cerevisiae IR-2 id A30( MAT a), Established from the Industrial Diploid Strain IR-2
DOI	10.1128/MRA.00018-19

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Chile
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	USA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	USA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA632495
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9; Illumina NextSeq 500
Year	2021
Author	Basile, et al.
Journal	Food Microbiology
Title	Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes.
DOI	10.1016/j.fm.2021.103753

Geographical_Origin	Tailand
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1chrI; +1chrVI
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125365.1; GCA_949122075.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Quebec City, Canada
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1chrIX; +1chrXI_complex; +1*chrXV_complex
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA604588
Original_Assembly_Accession	GCA_011799815.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq X
Year	2020
Author	Fijarczyk, et al.
Journal	G3: Genes, Genomes, Genetics
Title	The genome sequence of the Jean-Talon strain, an archeological beer yeast from Québec, reveals taces of adaptation to specific brewing conditions.
DOI	10.1534/g3.120.401149

Geographical_Origin	Fujian, China
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA817400
Original_Assembly_Accession	GCA_022837015.1
Sequencing_Technology	PacBio Sequel; Illumina MiSeq
Year	2022
Author	Liang, et al.
Journal	Frontiers in Microbiology
Title	Analysis of key genes responsible for low urea production in Saccharomyces cerevisiae JH301.
DOI	10.3389/fmicb.2022.894661

Geographical_Origin	Xiangxiyuan, Hubei, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	41. CHN IX
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819185.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125335.1; GCA_949121545.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123655.1; GCA_949121545.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121745.1; GCA_949121545.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124215.1; GCA_949123725.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124915.1; GCA_949123425.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJDB5836
Original_Assembly_Accession	GCA_002335645.1
Sequencing_Technology	PacBio RSII; Illumina GAII
Year	2017
Author	Mori, et al.
Journal	Genome Announcements
Title	Genome sequence of Saccharomyces cerevisiae strain Kagoshima No. 2, used for brewing the Japanese distilled spirit shōchū.
DOI	10.1128/genomeA.01126-17

Geographical_Origin	Korea
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	A potential probiotic yeast overproducing glutathione
Original_Bioproject_Accession	PRJNA373942
Original_Assembly_Accession	GCA_011316215.1
Sequencing_Technology	PacBio RSII
Year	2020
Author	Hwang, et al.
Journal	3 Biotech
Title	Genome sequence of the potential probiotic eukaryote Saccharomyces cerevisiae KCCM 51299.
DOI	10.1007/s13205-020-02174-9

Geographical_Origin	Shandong, China
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	With high tryptophol production ability
Original_Bioproject_Accession	PRJNA673994
Original_Assembly_Accession	GCA_018831675.1
Sequencing_Technology	PacBio RSII
Year	2020
Author	Gong, et al.
Journal	ResearchSquare
Title	Integrated Multi-Omics Analyses Reveal the Molecular Basis of Tryptophol Over-Accumulation in Saccharomyces Cerevisiae
DOI	10.21203/rs.3.rs-108779/v1

Geographical_Origin	Japan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125505.1; GCA_949121625.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Korea
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	Korean brewing yeast for fermentation
Original_Bioproject_Accession	PRJNA414350
Original_Assembly_Accession	GCA_003709285.1
Sequencing_Technology	PacBio RSII; Illumina HiSeq 2500
Year	2023
Author	Son, et al.
Journal	Microbial Biotechnology
Title	Integrated genomics and phenotype microarray analysis of Saccharomyces cerevisiae industrial strains for rice wine fermentation and recombinant protein production.
DOI	10.1111/1751-7915.14354

Geographical_Origin	India
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	33. Indian ocean islands
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA869102
Original_Assembly_Accession	GCA_030142945.1
Sequencing_Technology	ONT MinION; Illumina iSeq 100
Year	2023
Author	Collins, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Genetic basis for probiotic yeast phenotypes revealed by nanopore sequencing
DOI	10.1093/g3journal/jkad093

Geographical_Origin	Cauquenes, Chile
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho::HygMX ura3::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192295.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Cauquenes, Chile
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	Chile
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	Tamaulipas, Mexico
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	12. Mexican distillery/agave
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125765.1; GCA_949122125.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Rockport, Massachusetts, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	26. American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX4 ade2::hphNT1
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA828354
Original_Assembly_Accession	GCA_030034845.1
Sequencing_Technology	ONT MinION R9.4.1
Year	2022
Author	Hénault, et al.
Journal	Genome Research
Title	Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance.
DOI	10.1101/gr.276885.122

Geographical_Origin	Rockport, Massachusetts, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	26. American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX4 ade2::hphNT1
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA828354
Original_Assembly_Accession	GCA_030034815.1
Sequencing_Technology	ONT MinION R9.4.1
Year	2022
Author	Hénault, et al.
Journal	Genome Research
Title	Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance.
DOI	10.1101/gr.276885.122

Geographical_Origin	USA
Ecological_Origin	Engineered
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa-inc 4–28
Genetic_Markers	his3Δ200 leu2Δ0 met15Δ0 trp1Δ63 ura3Δ0
Extra_Notes	A lab strain with BY4733 background for in vivo multigene assemblies. The HO cleavage site in the MATa locus of BY4733 was replaced with the noncleavable MATa-inc 4–28 allele.
Original_Bioproject_Accession	PRJNA611915
Original_Assembly_Accession	GCA_014133995.2
Sequencing_Technology	ONT MinION R9.4.1; Illumina MiSeq
Year	2021
Author	Gerke, et al.
Journal	Microbiology Resource Announcements
Title	Draft genome sequence of Saccharomyces cerevisiae LW2591Y, a laboratory strain for in vivo multigene assemblies.
DOI	10.1128/mra.01418-20

Geographical_Origin	Wuling farm, Taichung, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	30. Taiwanese 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Luzhou, Sichuan, China
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA781019
Original_Assembly_Accession	GCA_025782755.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702605.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Majunga, Madagascar
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	24. TBD
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124785.1; GCA_949123745.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Majunga, Madagascar
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	08. African beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124815.1; GCA_949123595.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Paris, France
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125415.1; GCA_949123455.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Paris, France
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121765.1; GCA_949123455.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Paris, France
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122425.1; GCA_949123455.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Tinn, Telemark, Norway
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R10.3
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Kshaushi, Chuvash, Russia
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Ascoli Piceno, Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124255.1; GCA_949122385.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ascoli Piceno, Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122935.1; GCA_949122385.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ascoli Piceno, Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123475.1; GCA_949122385.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	West Africa
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949126015.1; GCA_949122035.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Burundi
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124935.1; GCA_949123265.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Botanical garden, Blagoveshchensk, Russia
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	34. Northern Eurasian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949126065.1; GCA_949122795.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Shaoxing, Zhejiang, China
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB5479
Original_Assembly_Accession	LN907784-LN907800
Sequencing_Technology	PacBio RSII P4-C2; Illumina HiSeq 2000
Year	2018
Author	Zhang, et al.
Journal	DNA Research
Title	Complete genome sequence and analysis of the industrial Saccharomyces cerevisiae strain N85 used in Chinese rice wine production
DOI	10.1093/dnares/dsy002

Geographical_Origin	North Carolina, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::HygMX
Extra_Notes	Labeled as YJM978 in the original study but corresponds to NC_02 in the S.cerevisiae 1002 genome project collection.
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702875.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Nigeria
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124285.1; GCA_949122915.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Pattee, NDPC, Cincinnati, Ohio, USA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	23. Distillery
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	From the ZymoBIOMICS Microbial Community Standard
Original_Bioproject_Accession	PRJNA477598
Original_Assembly_Accession	GCA_007556415.1
Sequencing_Technology	PacBio RSII
Year	2019
Author	McIntyre, et al.
Journal	Nature Communications
Title	Single-molecule sequencing detection of N6-methyladenine in microbial reference materials
DOI	10.1038/s41467-019-08289-9

Geographical_Origin	Netherlands
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrIII_complex
Phylogenetic_Clade	21. Mosiac 5
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125675.1; GCA_949122465.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Netherlands
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrIII_complex
Phylogenetic_Clade	21. Mosiac 5
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123645.1; GCA_949122465.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Netherlands
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrIII_complex
Phylogenetic_Clade	21. Mosiac 5
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123155.1; GCA_949122465.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	National Taiwan University campus, Taipei, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	30. Taiwanese 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	National Taiwan University campus, Taipei, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	30. Taiwanese 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Cilamitay, Hualien, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Castanopsis carlesii seed orchard, Taitung, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	29. Taiwanese 4
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Sanzhuku Recreation Farm, Taitung, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Shikeng Road, Nantou, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Shikeng Road, Nantou, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	The scaffold chrIV_chrX_chrXV_chrVIII carries both CEN4 and CEN10
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Shikeng Road, Nantou, Taiwan
Ecological_Origin	Wild
Ploidy_Status	3N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	30. Taiwanese 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Shikeng Road, Nantou, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	National Chi Nan University, Nantou, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	31. Taiwanese 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Da-Wang temple, Dongsha, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	31. Taiwanese 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	Wild type
Extra_Notes	Monosporic isolate derived from the Brazilian biofuel/cachaça strain PE-2
Original_Bioproject_Accession	PRJEB31792
Original_Assembly_Accession	GCA_905220325.1
Sequencing_Technology	PacBio RSII; Illumina MiSeq
Year	2021
Author	Jacobus, et al.
Journal	Frontiers in Microbiology
Title	Comparative genomics supports that Brazilian bioethanol Saccharomyces cerevisiae comprise a unified group of domesticated strains related to Cachaça spirit yeasts.
DOI	10.3389/fmicb.2021.644089

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	Wild type
Extra_Notes	Monosporic isolate derived from the Brazilian biofuel/cachaça strain PE-2
Original_Bioproject_Accession	PRJEB31792
Original_Assembly_Accession	GCA_905220315.1
Sequencing_Technology	PacBio RSII; Illumina MiSeq
Year	2021
Author	Jacobus, et al.
Journal	Frontiers in Microbiology
Title	Comparative genomics supports that Brazilian bioethanol Saccharomyces cerevisiae comprise a unified group of domesticated strains related to Cachaça spirit yeasts.
DOI	10.3389/fmicb.2021.644089

Geographical_Origin	Spain
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124945.1; GCA_949123245.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Spain
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124035.1; GCA_949123245.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Spain
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123295.1; GCA_949123245.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Aba, Abia State, Nigeria
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	12. Mexican distillery/agave
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124235.1; GCA_949123335.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Aba, Abia State, Nigeria
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	12. Mexican distillery/agave
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029703095.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Debrecen, Hungary
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	Monoisolate sample PY0001 from Saccharomyces cerevisiae 'var. boulardii' probiotic supplement isolated in Hungary.
Original_Bioproject_Accession	PRJNA813746
Original_Assembly_Accession	GCA_024732265.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina MiSeq
Year	2022
Author	Imre, et al.
Journal	Jounal of Fungi
Title	Heme oxygenase-1 (HMX1) loss of function increases the in-host fitness of the Saccharomyces 'boulardii' probiotic yeast in a mouse fungemia model.
DOI	10.3390/jof8050522

Geographical_Origin	Bērzpils, Latgale, Latvia
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R10.3
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Litingshan, Pingtung, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	29. Taiwanese 4
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrIII
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125345.1; GCA_949122485.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrIII
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949121785.1; GCA_949122485.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrIII
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122415.1; GCA_949122485.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Zinfandel vineyard, California, USA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	AMN1-BY ho∆::HygMX flo8∆::NatMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702635.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Zinfandel vineyard, California, USA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	leu2Δ0 ura3Δ0 hoΔ::KanMX
Extra_Notes	RM11-1a is a haploid derivative of RM11, which is a diploid derivative of Bb32(3),which is an ascus derived from Bb32, which is a natural isolate collected by Robert Mortimer from a California vineyard (Ravenswood Zinfandel) in 1993. It has high spore viability (80-90%) and has been extensively characterized phenotypically under a wide range of conditions. It has a significantly longer life span than typical lab yeast strains and accumulates age-associated abnormalities at a lower rate.
Original_Bioproject_Accession	PRJNA554649
Original_Assembly_Accession	GCA_009805665.1
Sequencing_Technology	ONT MinION; Illumina MiSeq
Year	2020
Author	Zhang & Emerson.
Journal	BioRxiv
Title	Inferring the genetic architecture of expression variation from replicated high throughput allele-specific expression experiments.
DOI	10.1101/699074

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949126085.1; GCA_949121645.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123065.1; GCA_949121645.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123545.1; GCA_949121645.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Fushan Botanical Garden, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Sri Lanka
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	33. Indian ocean islands
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125495.1; GCA_949122825.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Fushan Botanical Garden, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq2501
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Fushan Botanical Garden, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	03. Mosiac 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq2502
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Academia Sinica, Taipei, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	03. Mosiac 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq2503
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	SUC2 gal2 mal2 mel flo1 flo8-1 hap1 ho bio1 bio6
Extra_Notes	S288C is a widely used laboratory strain, designed by Robert Mortimer for biochemical studies, and specifically selected to be non-flocculent with a minimal set of nutritional requirements. S288C is the strain used in the systematic sequencing project, the reference sequence stored in SGD. S288C does not form pseudohyphae. In addition, since it has a mutated copy of HAP1, it is not a good strain for mitochondrial studies. It has an allelic variant of MIP1 which increases petite frequency. S288C is gal2- and does not use galactose anaerobically.
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002057635.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	SUC2 gal2 mal2 mel flo1 flo8-1 hap1 ho bio1 bio6
Extra_Notes	S288C is a widely used laboratory strain, designed by Robert Mortimer for biochemical studies, and specifically selected to be non-flocculent with a minimal set of nutritional requirements. S288C is the strain used in the systematic sequencing project, the reference sequence stored in SGD. S288C does not form pseudohyphae. In addition, since it has a mutated copy of HAP1, it is not a good strain for mitochondrial studies. It has an allelic variant of MIP1 which increases petite frequency. S288C is gal2- and does not use galactose anaerobically.
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192305.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	SUC2 gal2 mal2 mel flo1 flo8-1 hap1 ho bio1 bio6
Extra_Notes	S288C is a widely used laboratory strain, designed by Robert Mortimer for biochemical studies, and specifically selected to be non-flocculent with a minimal set of nutritional requirements. S288C is the strain used in the systematic sequencing project, the reference sequence stored in SGD. S288C does not form pseudohyphae. In addition, since it has a mutated copy of HAP1, it is not a good strain for mitochondrial studies. It has an allelic variant of MIP1 which increases petite frequency. S288C is gal2- and does not use galactose anaerobically.
Original_Bioproject_Accession	PRJNA588095
Original_Assembly_Accession	GCA_016858165.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	SUC2 gal2 mal2 mel flo1 flo8-1 hap1 ho bio1 bio6
Extra_Notes	Reference genome; S288C is a widely used laboratory strain, designed by Robert Mortimer for biochemical studies, and specifically selected to be non-flocculent with a minimal set of nutritional requirements. S288C is the strain used in the systematic sequencing project, the reference sequence stored in SGD. S288C does not form pseudohyphae. In addition, since it has a mutated copy of HAP1, it is not a good strain for mitochondrial studies. It has an allelic variant of MIP1 which increases petite frequency. S288C is gal2- and does not use galactose anaerobically.
Original_Bioproject_Accession	PRJNA43747
Original_Assembly_Accession	GCA_000146045.2
Sequencing_Technology	Sanger
Year	1996
Author	Goffeau, et al.
Journal	Science
Title	Life with 6000 genes.
DOI	10.1126/science.274.5287.546

Geographical_Origin	Nangangshan hiking trail, Taipei, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Nangangshan hiking trail, Taipei, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ura3 lys2 ho::LYS2 leu2Δ arg4-bgl cyh2-z
Extra_Notes	Lab strain derived from SK1
Original_Bioproject_Accession	PRJDB5253
Original_Assembly_Accession	GCA_026001015.1
Sequencing_Technology	PacBio RSII; Illumina MiSeq
Year	2018
Author	Muramoto, et al.
Journal	Nature Communications
Title	Phenotypic diversification by enhanced genome restructuring after induction of multiple DNA double-strand breaks.
DOI	10.1038/s41467-018-04256-y

Geographical_Origin	Fushan Botanical Garden, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	31. Taiwanese 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Sri Lanka
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	33. Indian ocean islands
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125565.1; GCA_949122015.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	France
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	21. Mosiac 5
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125775.1; GCA_949121925.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Italy
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125755.1; GCA_949121835.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Korea
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	Korean brewing yeast for fermentation
Original_Bioproject_Accession	PRJNA421034
Original_Assembly_Accession	GCA_004014915.1
Sequencing_Technology	PacBio RSII; Illumina HiSeq 2500
Year	2023
Author	Son, et al.
Journal	Microbial Biotechnology
Title	Integrated genomics and phenotype microarray analysis of Saccharomyces cerevisiae industrial strains for rice wine fermentation and recombinant protein production.
DOI	10.1111/1751-7915.14354

Geographical_Origin	North Carolina, USA
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192265.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Beinan, Taitung, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124425.1; GCA_949122195.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Taian, Miaoli, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124115.1; GCA_949122725.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002057885.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Fjord, Norway
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R10.3
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Brazil
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124905.1; GCA_949122855.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Tuling, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	40. Taiwanese 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Tuling, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	40. Taiwanese 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Fushan Botanical Garden, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Fjord, Norway
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Finland
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	17. Mixed origin 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Qinling Mountain, Shaanxi, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	39. CHN II
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124825.1; GCA_949123135.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Qinling Mountain, Shaanxi, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	39. CHN II
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819175.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	Qinling Mountain, Shaanxi, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	39. CHN II
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124635.1; GCA_949123575.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Engineered
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATalpha
Genetic_Markers	his3Δ1 leu2Δ0 lys2Δ0 ura3Δ0
Extra_Notes	Single-chromosome synthetic strain based on the BY4742 background
Original_Bioproject_Accession	PRJNA429985
Original_Assembly_Accession	GCA_003086655.1
Sequencing_Technology	PacBio Sequel; Illumina MiSeq
Year	2018
Author	Shao, et al.
Journal	Nature
Title	Creating a functional single-chromosome yeast.
DOI	10.1038/s41586-018-0382-x

Geographical_Origin	Alicante, Spain
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124145.1; GCA_949122815.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Tinn, Telemark, Norway
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R10.3
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ade1-14(UGA) trp1-289(UAG) his3 lys2 ura3-52 leu2-3,112 sup45::HIS3MX [pRS316-SUP45] [psi-] [PIN+]
Extra_Notes	The haploid strain 1A-D1628 (MATα ade1-14 his3 lys2 ura3-52 leu2-3,112 trp1 SUP45::HIS3[pRS315/SUP45]) was recovered from the meiotic progeny of D1628 (MATa//MATα ade1-14//ade1-14 his3//his3 lys2//lys2 ura3-52//ura3-52 leu2-3,112//leu2-3,112 trp1//trp1 SUP45//SUP45::HIS3) transformed with pRS315/SUP45.
Original_Bioproject_Accession	PRJNA656310
Original_Assembly_Accession	GCA_014898825.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2021
Author	Barbitoff, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage.
DOI	10.1093/g3journal/jkab029

Geographical_Origin	Germany
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	15. German beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	California, USA
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124615.1; GCA_949122305.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Walnut Creek, California, USA
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+2*chrII
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125725.1; GCA_949121815.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	California, USA
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	+3chrI; +2chrIII
Phylogenetic_Clade	26. American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125275.1; GCA_949122085.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	NA
Aneuploidy_Status	+1*chrXII
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA285730
Original_Assembly_Accession	GCA_001413975.1
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 2500
Year	2017
Author	Khatri, et al.
Journal	Scientific Reports
Title	Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii.
DOI	10.1038/s41598-017-00414-2

Geographical_Origin	USA
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	14. Ale beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA706006
Original_Assembly_Accession	GCA_019155645.1
Sequencing_Technology	ONT MinION; Illumina iSeq 100
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Malaysia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	35. Malaysian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB39456; PRJEB13017
Original_Assembly_Accession	GCA_949124605.1; GCA_949124025.1
Sequencing_Technology	ONT MinION R9.3; Illumina HiSeq 2000
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Malaysia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	35. Malaysian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124475.1; GCA_949121825.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Telok Senangin, Malaysia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	35. Malaysian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002058095.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Telok Senangin, Malaysia
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	35. Malaysian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho::HygMX ura3::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192315.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Great Inagua Island, Bahamas
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho::HygMX ura3::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192335.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Great Inagua Island, Bahamas
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	27. Mixed origin 3
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	26. American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	Araras, Sao Paulo, Brazil
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	04. Brazilian bioethanol
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124575.1; GCA_949122185.1
Sequencing_Technology	ONT PromethION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Far East, Russia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	37. Far East Asian
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB39456; PRJEB13017
Original_Assembly_Accession	GCA_949125475.1; GCA_949124065.1
Sequencing_Technology	ONT MinION R9.3; Illumina HiSeq 2000
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ha Noi, North Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1*chrI
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125895.1; GCA_949122545.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ha Noi, North Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	-1*chrI
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123915.1; GCA_949122545.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ha Noi, North Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949125285.1; GCA_949123365.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Ha Noi, North Vietnam
Ecological_Origin	Domesticated
Ploidy_Status	3N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949123285.1; GCA_949123365.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Norway
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	16. European farm house
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	leu2-3,112 his3-11,15 ura3-1 ade2-1 trp101 can1-100 RAD5
Extra_Notes	MATa haploid derivative from W303
Original_Bioproject_Accession	PRJNA237120
Original_Assembly_Accession	GCA_000773925.1
Sequencing_Technology	PacBio RSII P4-C2
Year	2015
Author	Berlin, et al.
Journal	Nature Biotechnology
Title	Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
DOI	10.1038/nbt.3238

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	leu2-3,112 his3-11,15 ura3-1 ade2-1 trp101 can1-100 RAD5
Extra_Notes	MATa haploid derivative from W303; Rescaffolded for assembly error correction.
Original_Bioproject_Accession	PRJNA324291
Original_Assembly_Accession	GCA_002163515.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2017
Author	Matheson, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Whole-genome sequence and variant analysis of W303, a widely-used strain of Saccharomyces cerevisiae.
DOI	10.1534/g3.117.040022

Geographical_Origin	Germany
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	Yes
Phylogenetic_Clade	15. German beer
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA1018716
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4
Year	2024
Author	Preiss, et al.
Journal	Applied Microbiology and Biotechnology
Title	European farmhouse brewing yeasts form a distinct genetic group.
DOI	10.1007/s00253-024-13267-3

Geographical_Origin	Tuling, Yilan, Taiwan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	25. CHN V
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA755173
Original_Assembly_Accession	NA
Sequencing_Technology	ONT GridION R9.4.1; Illumina HiSeq 2500
Year	2022
Author	Lee, et al.
Journal	Genome Research
Title	Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of pre-domesticated lineages.
DOI	10.1101/gr.276286.121

Geographical_Origin	Shandong, China
Ecological_Origin	Lab
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	hoΔ
Extra_Notes	A fast-growing strain with high glucose concentration tolerance
Original_Bioproject_Accession	PRJNA748154
Original_Assembly_Accession	GCA_029403705.1
Sequencing_Technology	PacBio Sequel
Year	2024
Author	Long, et al.
Journal	mBio
Title	A robust yeast chassis: comprehensive characterization of a fast-growing Saccharomyces cerevisiae
DOI	10.1128/mbio.03196-23

Geographical_Origin	Xiangxiyuan, Hubei, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	41. CHN IX
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819195.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	Philippines
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	24. TBD
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029703205.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ura3::KanMX lys2::URA3 ho::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002058645.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192255.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Japan
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	22. Asian fermentation
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA360861
Original_Assembly_Accession	GCA_002271945.1
Sequencing_Technology	PacBio RSII P6-C2
Year	2017
Author	Kim, et al.
Journal	eLife
Title	The dynamic three-dimensional organization of the diploid yeast genome
DOI	10.7554/eLife.23623

Geographical_Origin	Korea
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	pep:HIS3 prb1-Δ1.6R can1 his3-Δ200 ura3-52
Extra_Notes	Industrial strain used for recombinant protein production
Original_Bioproject_Accession	PRJNA817008
Original_Assembly_Accession	CP093858-CP093873
Sequencing_Technology	PacBio Sequel; Illumina NovaSeq 6000
Year	2023
Author	Son, et al.
Journal	Microbial Biotechnology
Title	Integrated genomics and phenotype microarray analysis of Saccharomyces cerevisiae industrial strains for rice wine fermentation and recombinant protein production.
DOI	10.1111/1751-7915.14354

Geographical_Origin	France
Ecological_Origin	Domesticated
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB38713; PRJNA396809
Original_Assembly_Accession	GCA_903819135.2
Sequencing_Technology	PacBio Sequel; Illumina HiSeq 2000
Year	2021
Author	Bendixsen, et al.
Journal	Genome Biology and Evolution
Title	Genomic evidence of an ancient east asian divergence event in wild Saccharomyces cerevisiae.
DOI	10.1093/gbe/evab001

Geographical_Origin	France
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	NA
Ecological_Origin	Engineered
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	his3Δ1 leu2Δ0 met15Δ0 ura3Δ0
Extra_Notes	BY4741-derived
Original_Bioproject_Accession	PRJNA493199
Original_Assembly_Accession	GCA_009663275.1
Sequencing_Technology	ONT MinION R9.4.1
Year	2019
Author	Fleiss, et al.
Journal	PLoS Genetics
Title	Reshuffling yeast chromosomes with CRISPR/Cas9.
DOI	10.1371/journal.pgen.1008332

Geographical_Origin	Australia
Ecological_Origin	Domesticated
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA479388
Original_Assembly_Accession	GCA_003591695.1
Sequencing_Technology	ONT MinION R9.4; Illumina HiSeq
Year	2020
Author	Tondini, et al.
Journal	Food Microbiology
Title	Early adaptation strategies of Saccharomyces cerevisiae and Torulaspora delbrueckii to co-inoculation in high sugar grape must-like media.
DOI	10.1016/j.fm.2020.103463

Geographical_Origin	Sauternes, France
Ecological_Origin	Domesticated
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	03. Mosiac 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	USA
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::HygMX flo8∆::NatMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702625.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	San Francisco Bay area, California, USA
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	20. Mosiac 4
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA773450
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MiniON R9.4.1; Illumina HiSeq
Year	2022
Author	Heasley & Argueso
Journal	Genetics
Title	Genomic characterization of a wild diploid isolate of Saccharomyces cerevisiae reveals an extensive and dynamic landscape of structural variation.
DOI	10.1093/genetics/iyab193

Geographical_Origin	San Francisco Bay area, California, USA
Ecological_Origin	Human
Ploidy_Status	2N
Zygosity_Status	Heterozygous
Aneuploidy_Status	+1*chrI
Phylogenetic_Clade	20. Mosiac 4
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA773450
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MiniON R9.4.1; Illumina HiSeq
Year	2022
Author	Heasley & Argueso
Journal	Genetics
Title	Genomic characterization of a wild diploid isolate of Saccharomyces cerevisiae reveals an extensive and dynamic landscape of structural variation.
DOI	10.1093/genetics/iyab193

Geographical_Origin	California, USA
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	20. Mosiac 4
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124355.1; GCA_949123305.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	San Francisco Bay area, California, USA
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	03. Mosiac 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB14774
Original_Assembly_Accession	GCA_949124325.1; GCA_949122255.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	San Francisco Bay area, California, USA
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	03. Mosiac 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702895.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Italy
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	Bergamo, Italy
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	Italy
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124275.1; GCA_949122365.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Italy
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029703225.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Italy
Ecological_Origin	Human
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	01. Wine European 1
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ ura3::KanMX-Barcode ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	13. Lab-related
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ura3-52 lys2-801 ade2-101 trpl-Δ63 his3-Δ200 leu2-Δ1
Extra_Notes	S288C-derived lab strain
Original_Bioproject_Accession	PRJDB5253
Original_Assembly_Accession	GCA_026000965.1
Sequencing_Technology	PacBio RSII; Illumina MiSeq
Year	2018
Author	Muramoto, et al.
Journal	Nature Communications
Title	Phenotypic diversification by enhanced genome restructuring after induction of multiple DNA double-strand breaks.
DOI	10.1038/s41467-018-04256-y

Geographical_Origin	USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	32. African palm wine
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho∆::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702905.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ura3::KanMX ho::HygMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002057995.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124185.1; GCA_949123635.1
Sequencing_Technology	ONT MinION R7.3; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124835.1; GCA_949122515.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	20. Mosiac 4
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	ho∆::HygMX flo8∆::NatMX
Extra_Notes	Derived from the YPS163 (AVI) diploid strain; Considered largely isogenic to YPS163_1b (ACD) except for the mating type locus but might be not according to the phylogenetic tree.
Original_Bioproject_Accession	PRJNA779940
Original_Assembly_Accession	GCA_029702645.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Weller, et al.
Journal	Genome Research
Title	Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity.
DOI	10.1101/gr.277515.122

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ho::HygMX ura3::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192325.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	28. North American
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ, ura3::KanMX-Barcode, ygr043C::NatMX
Extra_Notes	The corresponding assembly file in the NCBI Genbank is incorrect
Original_Bioproject_Accession	PRJNA552112
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 4000
Year	2020
Author	Linder, et al.
Journal	Genetics
Title	Two synthetic 18-way outcrossed populations of diploid budding yeast with utility for complex trait dissection.
DOI	10.1534/genetics.120.303202

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949124925.1; GCA_949124005.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	NA
Ecological_Origin	Domesticated
Ploidy_Status	4N
Zygosity_Status	Heterozygous
Aneuploidy_Status	None
Phylogenetic_Clade	18. Mixed origin 2
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB50706
Original_Assembly_Accession	GCA_949122555.1; GCA_949124005.1
Sequencing_Technology	ONT MinION R9.4.1; Illumina HiSeq 2500
Year	2023
Author	O’Donnell, et al.
Journal	Nature Genetics
Title	Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
DOI	10.1038/s41588-023-01459-y

Geographical_Origin	Castelo de Vide, Portugal
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	09. Mediterranean oak
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192275.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Chiba Perfecture, Japan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB33725
Original_Assembly_Accession	GCA_902192245.1
Sequencing_Technology	PacBio RSII P6-C4
Year	2020
Author	Czaja, et al.
Journal	PLoS Genetics
Title	Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination.
DOI	10.1371/journal.pgen.1008632

Geographical_Origin	Qinling Mountain, Shaanxi, China
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB3202; ERP001702;ERP001703;ERP001704
Original_Assembly_Accession	GCA_000292725.1
Sequencing_Technology	Roche 454; ABI SOLiD
Year	2013
Author	Liti, et al.
Journal	BMC Genomics
Title	High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.
DOI	10.1186/1471-2164-14-69

Geographical_Origin	Lewis Pass, Klondyke valley route, New Zealand
Ecological_Origin	Wild
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	S. chiloensis (AUS)
Original_Bioproject_Accession	PRJEB57075
Original_Assembly_Accession	GCA_947243795.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Lewis Pass, Klondyke valley route, New Zealand
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	S. chiloensis (AUS)
Original_Bioproject_Accession	PRJNA1084000
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4.1
Year	2024
Author	Peña, et al.
Journal	BioRxiv
Title	An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia
DOI	10.1101/2024.04.29.591617

Geographical_Origin	Chiloé, Chile
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	S. chiloensis (SA-C)
Original_Bioproject_Accession	PRJNA1084000
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4.1
Year	2024
Author	Peña, et al.
Journal	BioRxiv
Title	An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia
DOI	10.1101/2024.04.29.591617

Geographical_Origin	Chiloé, Chile
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	S. chiloensis (SA-C)
Original_Bioproject_Accession	PRJNA1084000
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4.1
Year	2024
Author	Peña, et al.
Journal	BioRxiv
Title	An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia
DOI	10.1101/2024.04.29.591617

Geographical_Origin	Reserva costera valdiviana, Valdivia, Los Ríos, Chile
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	S. chiloensis (SA-C)
Original_Bioproject_Accession	PRJNA1084000
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4.1
Year	2024
Author	Peña, et al.
Journal	BioRxiv
Title	An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia
DOI	10.1101/2024.04.29.591617

Geographical_Origin	Reserva costera valdiviana, Valdivia, Los Ríos, Chile
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	S. chiloensis (SA-C)
Original_Bioproject_Accession	PRJNA1084000
Original_Assembly_Accession	NA
Sequencing_Technology	ONT MinION R9.4.1
Year	2024
Author	Peña, et al.
Journal	BioRxiv
Title	An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia
DOI	10.1101/2024.04.29.591617

Geographical_Origin	Villarrica, Chile
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA578372
Original_Assembly_Accession	GCA_015353015.1
Sequencing_Technology	ONT MinION R9; Illumina HiSeq X
Year	2020
Author	Mardones, et al.
Journal	Microbial Biotechnology
Title	Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates.
DOI	10.1111/1751-7915.13545

Geographical_Origin	Coyhaique, Chile
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA578372
Original_Assembly_Accession	GCA_015353045.1
Sequencing_Technology	ONT MinION R9; Illumina HiSeq X
Year	2020
Author	Mardones, et al.
Journal	Microbial Biotechnology
Title	Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates.
DOI	10.1111/1751-7915.13545

Geographical_Origin	Nahuel Huapi National Park, Northwestern Patagonia, Argentina
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	A monosporic derivative of the species type strain (CRUB 1568T = PYCC 6148T = CBS 12357T)
Original_Bioproject_Accession	PRJNA450912;PRJNA450912
Original_Assembly_Accession	GCA_003327605.1
Sequencing_Technology	ONT MinION R9.4; Illumina HiSeq 2500
Year	2018
Author	Brickwedde, et al.
Journal	Frontiers in Microbiology
Title	Structural, physiological and regulatory analysis of maltose transporter genes in Saccharomyces eubayanus CBS 12357T.
DOI	10.3389/fmicb.2018.01786

Geographical_Origin	Dublin, Ireland
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB55404
Original_Assembly_Accession	GCA_946408725.1
Sequencing_Technology	ONT MinION; BGI DNBseq
Year	2022
Author	Bergin, et al.
Journal	FEMS Yeast Research
Title	Identification of European isolates of the lager yeast parent Saccharomyces eubayanus.
DOI	10.1093/femsyr/foac053

Geographical_Origin	Dublin, Ireland
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB55404
Original_Assembly_Accession	GCA_946405395.1
Sequencing_Technology	ONT MinION; BGI DNBseq
Year	2022
Author	Bergin, et al.
Journal	FEMS Yeast Research
Title	Identification of European isolates of the lager yeast parent Saccharomyces eubayanus.
DOI	10.1093/femsyr/foac053

Geographical_Origin	Saint Auban, France
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB24816
Original_Assembly_Accession	GCA_900290405.1
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 2500
Year	2018
Author	Naseeb, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Whole genome sequencing, de novo assembly and phenotypic profiling for the new budding yeast species Saccharomyces jurei.
DOI	10.1534/g3.118.200476

Geographical_Origin	Saint Auban, France
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB24816
Original_Assembly_Accession	NA
Sequencing_Technology	PacBio RSII P6-C4; Illumina HiSeq 2500
Year	2018
Author	Naseeb, et al.
Journal	G3: Genes, Genomes, Genetics
Title	Whole genome sequencing, de novo assembly and phenotypic profiling for the new budding yeast species Saccharomyces jurei.
DOI	10.1534/g3.118.200476

Geographical_Origin	Ciudad Real, Spain
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	NA
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA480800
Original_Assembly_Accession	GCA_003327635.1
Sequencing_Technology	ONT MinION R9.4; Illumina MiSeq
Year	2018
Author	Boonekamp, et al.
Journal	Frontiers in Genetics
Title	The genetic makeup and expression of the glycolytic and fermentative pathways are highly conserved within the Saccharomyces genus.
DOI	10.3389/fgene.2018.00504

Geographical_Origin	Japan
Ecological_Origin	Wild
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB57075
Original_Assembly_Accession	GCA_947243775.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Portugal
Ecological_Origin	Wild
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB57075
Original_Assembly_Accession	GCA_947243785.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Japan
Ecological_Origin	Wild
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB57075
Original_Assembly_Accession	GCA_947241705.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Japan
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA934353
Original_Assembly_Accession	GCA_029884725.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Chen, et al.
Journal	BioRxiv
Title	Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces
DOI	10.1101/2023.12.20.572574

Geographical_Origin	Mt. Daisen, Tottori, Japan
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA934353
Original_Assembly_Accession	GCA_029884715.1
Sequencing_Technology	PacBio Sequel
Year	2023
Author	Chen, et al.
Journal	BioRxiv
Title	Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces
DOI	10.1101/2023.12.20.572574

Geographical_Origin	Moscow, Russia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002079055.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	California, USA
Ecological_Origin	Lab
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	ura3-100 Ty1-155-Δura3(Scer)-101 his3-Δ200hisG
Extra_Notes	NA
Original_Bioproject_Accession	PRJNA748953
Original_Assembly_Accession	CP081969.2-CP081986.2
Sequencing_Technology	PacBio Sequel; Illumina NovoSeq 6000
Year	2022
Author	Chen, et al.
Journal	Microbiology Resource Announcements
Title	Genome assembly of the Ty1-Less Saccharomyces paradoxus strain DG1768.
DOI	10.1128/mra.00868-21

Geographical_Origin	Sainte-Catherine-de-la-Jacques-Cartier, Canada
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	SpC lineage
Original_Bioproject_Accession	PRJNA514804; PRJNA479851
Original_Assembly_Accession	GCA_004353095.1
Sequencing_Technology	ONT MinION R9.5.1; Illumina HiSeq X
Year	2019
Author	Eberlein, et al.
Journal	Nature Communications
Title	Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.
DOI	10.1038/s41467-019-08809-7

Geographical_Origin	Hull, QC, Canada
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	SpA lineage
Original_Bioproject_Accession	PRJNA514804; PRJNA479851
Original_Assembly_Accession	GCA_004352965.1
Sequencing_Technology	ONT MinION R9.5.1; Illumina HiSeq X
Year	2019
Author	Eberlein, et al.
Journal	Nature Communications
Title	Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.
DOI	10.1038/s41467-019-08809-7

Geographical_Origin	Pointe Platon, QC, Canada
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	SpC* lineage
Original_Bioproject_Accession	PRJNA514804; PRJNA479851
Original_Assembly_Accession	GCA_004353035.1
Sequencing_Technology	ONT MinION R9.5.1; Illumina HiSeq X
Year	2019
Author	Eberlein, et al.
Journal	Nature Communications
Title	Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.
DOI	10.1038/s41467-019-08809-7

Geographical_Origin	Mont-Saint-Hilaire, QC, Canada
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	SpB lineage
Original_Bioproject_Accession	PRJNA514804; PRJNA479851
Original_Assembly_Accession	GCA_004353105.1
Sequencing_Technology	ONT MinION R9.5.1; Illumina HiSeq X
Year	2019
Author	Eberlein, et al.
Journal	Nature Communications
Title	Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.
DOI	10.1038/s41467-019-08809-7

Geographical_Origin	Ternei, Russia
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002079085.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Mississauga, ON, Canada
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	SpD lineage
Original_Bioproject_Accession	PRJNA514804; PRJNA479851
Original_Assembly_Accession	GCA_004352945.1
Sequencing_Technology	ONT MinION R9.5.1; Illumina HiSeq X
Year	2019
Author	Eberlein, et al.
Journal	Nature Communications
Title	Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.
DOI	10.1038/s41467-019-08809-7

Geographical_Origin	Rio de Janeiro, Brazil
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002079145.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Hawaii, USA
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATalpha
Genetic_Markers	hoΔ::KanMX
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002079175.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Mississauga, ON, Canada
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	SpD lineage
Original_Bioproject_Accession	PRJNA514804; PRJNA479851
Original_Assembly_Accession	GCA_004352955.1
Sequencing_Technology	ONT MinION R9.5.1; Illumina HiSeq X
Year	2019
Author	Eberlein, et al.
Journal	Nature Communications
Title	Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.
DOI	10.1038/s41467-019-08809-7

Geographical_Origin	Pennsylvania, USA
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	NA
Original_Bioproject_Accession	PRJEB7245; PRJNA340312
Original_Assembly_Accession	GCA_002079115.1
Sequencing_Technology	PacBio RSII P4-C2/P6-C4; Illumina HiSeq 2500
Year	2017
Author	Yue, et al.
Journal	Nature Genetics
Title	Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
DOI	10.1038/ng.3847

Geographical_Origin	Avila, Spain
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ::NatMX
Extra_Notes	With the same genetic background to NRRL Y-11845
Original_Bioproject_Accession	PRJNA753102
Original_Assembly_Accession	GCA_019953615.1
Sequencing_Technology	PacBio Sequel; Illumina GAII
Year	2022
Author	Chen, et al.
Journal	Microbiology Resource Announcements
Title	Long-read genome assembly of Saccharomyces uvarum strain CBS 7001.
DOI	10.1128/mra.00972-21

Geographical_Origin	Avila, Spain
Ecological_Origin	Wild
Ploidy_Status	NA
Zygosity_Status	NA
Aneuploidy_Status	NA
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	NA
Genetic_Markers	NA
Extra_Notes	With the same genetic background to NRRL Y-11845
Original_Bioproject_Accession	PRJEB57075
Original_Assembly_Accession	GCA_947243805.1
Sequencing_Technology	PacBio Sequel
Year	NA
Author	NA
Journal	NA
Title	NA
DOI	NA

Geographical_Origin	Avila, Spain
Ecological_Origin	Wild
Ploidy_Status	1N
Zygosity_Status	None
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	Yes
Strain_Mating_Type	MATa
Genetic_Markers	hoΔ::NatMX
Extra_Notes	With the same genetic background to NRRL Y-11845
Original_Bioproject_Accession	PRJNA882904
Original_Assembly_Accession	GCA_027557585.1
Sequencing_Technology	ONT MinION R9.4.1
Year	2023
Author	Fay, et al.
Journal	Genome Biology and Evolution
Title	Divergence in the Saccharomyces species’ heat shock response is indicative of their thermal tolerance
DOI	10.1093/gbe/evad207

Geographical_Origin	Avila, Spain
Ecological_Origin	Wild
Ploidy_Status	2N
Zygosity_Status	Homozygous
Aneuploidy_Status	None
Phylogenetic_Clade	NA
Nuclear_Assembly_Availability	Yes
Mitochondrial_Assembly_Availability	No
Strain_Mating_Type	MATa/MATalpha
Genetic_Markers	Wild type
Extra_Notes	With the same genetic background to CBS7001
Original_Bioproject_Accession	PRJNA882904
Original_Assembly_Accession	GCA_027557565.1
Sequencing_Technology	ONT MinION R9.4.1
Year	2023
Author	Fay, et al.
Journal	Genome Biology and Evolution
Title	Divergence in the Saccharomyces species’ heat shock response is indicative of their thermal tolerance
DOI	10.1093/gbe/evad207

Tips

CBK.asm01.HP0

CPA_1a.asm01.HP0

BBM_1a.asm01.HP0

CPG_1a.asm01.HP0

BBT.asm01.collapsed

BBT.asm01.HP

BDC_1c.asm01.HP0

BDF_1d.asm01.HP0

BDH_1b.asm01.HP0

2_105.asm01.collapsed

ALS_1a.asm01.HP0

273614N.asm01.HP0

273614N.asm02.HP0

CBM.asm01.collapsed

CBM.asm01.HP1

CBM.asm01.HP2

CFC.asm01.collapsed

CFC.asm01.HP

CFF.asm01.collapsed

CFF.asm01.HP1

CFF.asm01.HP2

74D694.asm01.HP0

ANM.asm01.collapsed

ANM.asm01.HP

ANL.asm01.collapsed

ANL.asm01.HP

A20_Citrus.asm01.collapsed

AGY731.asm01.HP0

CAS_1a.asm01.HP0

BAW6.asm01.HP0

BC187.asm01.HP0

biocodex.asm01.HP0

BAK_1a.asm01.HP0

BJ4.asm01.HP0

BAI_1a.asm01.HP0

BY.asm01.HP0

BY4742.asm01.HP0

CRL.asm01.HP0

CaliAle.asm01.collapsed

AEL.asm01.collapsed

AEL.asm01.HP1

AEL.asm01.HP2

AIG.asm01.HP0

ASG.asm01.HP0

AFH.asm01.HP0

AHG.asm01.HP0

AAC.asm01.collapsed

AAC.asm01.HP1

AAC.asm01.HP2

AFI.asm01.HP0

AGK.asm01.HP0

AIC.asm01.HP0

ABL.asm01.HP0

AIE.asm01.HP0

AGA_1a.asm01.HP0

AHL.asm01.HP0

AAB.asm01.HP0

ASB.asm01.collapsed

ASB.asm01.HP1

ASB.asm01.HP2

AIF.asm01.collapsed

AIF.asm01.HP1

AIF.asm01.HP2

AQG_2a.asm01.HP0

AEG.asm01.HP0

AEH.asm01.HP0

BBF.asm01.collapsed

BBF.asm01.HP1

BBF.asm01.HP2

AVB.asm01.HP0

ATV.asm01.collapsed

ATV.asm01.HP

CENPKL.asm01.HP0

CENPK1137D.asm01.HP0

CENPK1137D.asm02.HP0

CQS_1a.asm01.HP0

AVN.asm01.collapsed

AVN.asm01.HP

CICC1445.asm01.collapsed