Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
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Strains
Phylogeny
Nuclear tree
Mitochondrial tree
Pangenome
Assembly quality assessment
Average nucleotide identity
Genome content variation
Pantranscriptome
Single gene query
Multi-gene query
Principal component analysis
Pairwise strain correlation
Panproteome
Single gene query
Multi-gene query
Principal component analysis
Pairwise strain correlation
Panphenome
Phenotype query
Principal component analysis
Pairwise strain correlation
Pairwise trait correlation
Tools
JBrowse
Synteny
BLAST
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Data Source
2024_Muenzner_Nature
2024_Teyssonnière_PNAS
Strain collection
ScRAPdb strains with matched proteome data
1002ScGP strains with matched proteome data
A.
Principal component analysis of protein-seq data (log2(LFQ_Intensity+1))
Colored and shaped by:
Ecology
Ploidy
Aneuploidy