Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1514-maker-CDL_3-6404 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1515-maker-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1516-maker-YAN-14225 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1517-maker-ALI_5-15258 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1518-maker-ALI_5-15258 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1519-maker-BTG_3-6441 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1520-maker-CGH_5-16625 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1521-maker-BAG_6-6327 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1522-maker-BRK_4-4809 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1523-maker-BRK_4-4809 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1524-maker-ARH_5-11102 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1525-maker-CQS_4-6365 | NA | NA | NA | NA | Accessory | candidate HGT | Kluyverolactis sp. | Kluyveromyces lactis mitochondrion |
| 1526-maker-CQS_4-6365 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1527-maker-CDE_2-5632 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1528-maker-CNT_4-21642 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |