Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1499-maker-BVC_6-19502 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1500-maker-CPI_4-15903 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1501-maker-YDB-17846 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1502-maker-BEA_6-11925 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1503-maker-CEQ_4-7370 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1504-maker-AIE_1-5044 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1505-maker-ANL_2-46428 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1506-maker-AMH_5-6583 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1507-maker-APS_4-8484 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1508-maker-AVB_8-8060 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1509-maker-AVT_6-51832 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1510-maker-YCJ-7201 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1511-maker-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1512-maker-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1513-maker-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |