Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1483-maker-AHF_3-9619 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1484-maker-CMG_6-37743 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1485-maker-CMG_6-37743 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1487-maker-AEL_3-25454 | NA | NA | NA | NA | Accessory | HGT | Kazachstania/Naumozymia | Torulaspora delbrueckii CBS 1146 chr 7 / S, paradoxus |
| 1488-maker-AEL_3-25454 | NA | NA | NA | NA | Accessory | HGT | Candida | Wickerhamomyces ciferrii |
| 1489-maker-BTE_3-67629 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1490-maker-BNB_4-11386 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1491-maker-BPL_2-7584 | NA | NA | NA | NA | Accessory | candidate HGT | Kazachstania sp. | NA |
| 1492-maker-BEE_6-12017 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1493-maker-BEE_6-12017 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1494-maker-BEE_6-12017 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1495-maker-ACH_7-12998 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1496-maker-CHB_4-9987 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1497-maker-CDN_4-6216 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1498-maker-CDN_4-6216 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |