Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1468-maker-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | NA | Torulaspora delbrueckii NRRL Y-50541 chr3 |
| 1469-maker-API_4-23720 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1470-maker-BGL_1-18155 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1471-maker-CGE_5-5798 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1472-maker-AND_4-5595 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1473-maker-CET_4-8407 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1474-maker-CFC_2-43241 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1475-maker-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1476-maker-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1477-maker-CGH_5-16559 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1478-maker-BAG_6-6340 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1479-maker-AHG_3-5017 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1480-maker-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1481-maker-CPC_4-27355 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1482-maker-BRK_4-4772 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |