Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1453-maker-ACG_7-9645 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1454-maker-BDK_5-8644 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1455-maker-BTT_3-19676 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1456-maker-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1457-maker-CCH_4-6793 | NA | NA | NA | NA | Accessory | candidate HGT | Kazachstania sp. | NA |
| 1458-maker-CPL_4-15597 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1459-maker-AMA_5-10173 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1460-maker-AMA_5-10173 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1461-maker-AMA_5-10173 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1462-maker-CPM_4-14876 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1463-maker-CCQ_1-5741 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1464-maker-BRG_4-12215 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1465-maker-BHI_4-7563 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1466-maker-ACQ_8-4774 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1467-maker-ABM_5-4633 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |