Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1436-maker-BDE_8-15861 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1437-maker-BDP_5-11439 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1438-maker-YBR-7232 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1439-maker-AHM_1-7103 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1440-maker-AHM_1-7103 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1441-maker-CLM_4-7921 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1442-maker-CDK_4-10433 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1445-maker-AMD_5-6572 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1446-maker-CDM_4-7429 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1447-maker-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1448-maker-BBM_6-7237 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1449-maker-AEF_8-5122 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1450-maker-ANM_2-42651 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1451-maker-AMH_5-6637 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1452-maker-YCR-6505 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |