Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1421-augustus_masked-CPQ_4-15088 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1422-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1423-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1424-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1425-augustus_masked-AHB_2-7036 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1426-augustus_masked-AHL_3-8012 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1427-augustus_masked-AHL_3-8012 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1428-augustus_masked-AHL_3-8012 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1429-augustus_masked-AHL_3-8012 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1430-augustus_masked-CPQ_4-15272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1431-augustus_masked-CPQ_4-15272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1432-augustus_masked-CPQ_4-15272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1433-augustus_masked-CPQ_4-15272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1434-augustus_masked-CPQ_4-15272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1435-maker-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |