Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1406-augustus_masked-AQA_4-7358 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1407-augustus_masked-CGD_5-5424 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1408-augustus_masked-CPL_4-15064 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1409-augustus_masked-CPN_4-15749 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1410-augustus_masked-CPN_4-15749 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1411-augustus_masked-CCL_1-4471 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1412-augustus_masked-CPN_4-15749 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1413-augustus_masked-AID_2-6220 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1414-augustus_masked-AID_2-6220 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1415-augustus_masked-BBM_6-6977 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1416-augustus_masked-BBM_6-6977 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1417-augustus_masked-CPG_1-7550 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1418-augustus_masked-CPG_1-7550 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1419-augustus_masked-CPG_1-7550 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1420-augustus_masked-AQA_4-7362 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |