Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1391-augustus_masked-CEG_4-7331 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1392-augustus_masked-CGD_5-5418 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1393-augustus_masked-CGD_5-5418 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1394-augustus_masked-BMB_1-4668 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1395-augustus_masked-ATH_3-9260 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1396-augustus_masked-CPA_4-16415 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1397-augustus_masked-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1398-augustus_masked-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1399-augustus_masked-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1400-augustus_masked-ACL_7-7535 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1401-augustus_masked-CQS_4-6420 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1402-augustus_masked-BBM_6-7261 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1403-augustus_masked-AFL_5-6754 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1404-augustus_masked-AID_2-6352 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1405-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |