Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1376-augustus_masked-BNB_4-11356 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1377-augustus_masked-CDT_2-5315 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1378-augustus_masked-YDM-5288 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1379-augustus_masked-AQA_4-7239 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1380-augustus_masked-AQA_4-7239 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1381-augustus_masked-AQA_4-7239 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1382-augustus_masked-AQA_4-7239 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1383-augustus_masked-AQA_4-7239 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1384-augustus_masked-CDT_2-5272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1385-augustus_masked-CDT_2-5272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1386-augustus_masked-CPN_4-15370 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1387-augustus_masked-CPN_4-15370 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1388-augustus_masked-CEG_4-7331 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1389-augustus_masked-CEG_4-7331 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1390-augustus_masked-CEG_4-7331 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |