Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 128-augustus_masked-1697-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 129-augustus_masked-1697-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 130-augustus_masked-1697-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 131-augustus_masked-1697-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 132-augustus_masked-1697-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 133-augustus_masked-1698-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 134-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 135-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 136-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 137-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 138-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 139-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 140-augustus_masked-1700-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 141-augustus_masked-1706-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 142-augustus_masked-1731-ATP_4 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |