Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1361-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1362-augustus_masked-BAM_7-7195 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1363-augustus_masked-CDT_2-5317 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1364-augustus_masked-CDT_2-5317 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1365-augustus_masked-CQS_4-6444 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1366-augustus_masked-CQS_4-6444 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1367-augustus_masked-BPF_4-10460 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1368-augustus_masked-YDM-4987 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1369-augustus_masked-AIG_2-6522 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1370-augustus_masked-ALT_5-7832 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1371-augustus_masked-BAF_6-18361 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1372-augustus_masked-BAF_6-18361 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1373-augustus_masked-AAG_6-7250 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1374-augustus_masked-BEP_4-7596 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1375-augustus_masked-CDD_2-5914 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |