Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1345-augustus_masked-CPQ_4-15150 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1346-augustus_masked-CPQ_4-15150 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1347-augustus_masked-CPM_4-14657 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1348-augustus_masked-CPM_4-14657 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1349-augustus_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1350-augustus_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1351-augustus_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1353-augustus_masked-CPQ_4-14808 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1354-augustus_masked-CPK_4-16612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1355-augustus_masked-CPK_4-16612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1356-augustus_masked-CPK_4-16612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1357-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1358-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1359-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1360-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |