Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1330-augustus_masked-CPI_4-15337 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1331-augustus_masked-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1332-augustus_masked-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1333-augustus_masked-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1334-augustus_masked-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1335-augustus_masked-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1336-augustus_masked-CPQ_4-14811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1337-augustus_masked-CPQ_4-14811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1338-augustus_masked-CPK_4-16409 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1339-augustus_masked-CPK_4-16409 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1340-augustus_masked-AVB_8-7811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1341-augustus_masked-AQM_4-11146 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1342-augustus_masked-CDT_2-5098 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1343-augustus_masked-AVB_8-7935 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1344-augustus_masked-AHH_3-5888 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |