Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1315-augustus_masked-CPA_4-16589 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1316-augustus_masked-CPA_4-16589 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1317-augustus_masked-YBK-6315 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1318-augustus_masked-BDM_5-22999 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1319-augustus_masked-BDM_5-22999 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1320-augustus_masked-BDM_5-22999 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1321-augustus_masked-BDM_5-22999 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1322-augustus_masked-CPR_4-17852 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1323-augustus_masked-CPR_4-17852 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1324-augustus_masked-AHM_1-6883 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1325-augustus_masked-YBP-8463 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1326-augustus_masked-AID_2-6383 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1327-augustus_masked-AVB_8-7945 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1328-augustus_masked-AVB_8-7945 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1329-augustus_masked-CPI_4-15337 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |