Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1297-augustus_masked-ASB_2-40163 | NA | NA | NA | NA | Accessory | candidate HGT | Kuraishia | Pichia membrafaciens/Meyerozyma guilliermondii |
| 1298-augustus_masked-AQA_4-7348 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1299-augustus_masked-AQA_4-7348 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1300-augustus_masked-AKE_3-7154 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1301-augustus_masked-CQS_4-6075 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1302-augustus_masked-CQS_4-6075 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1303-augustus_masked-BAG_6-6313 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1307-augustus_masked-AHL_3-8025 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1308-augustus_masked-AHL_3-8025 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1309-augustus_masked-AHH_3-5944 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1310-augustus_masked-BCQ_8-11841 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1311-augustus_masked-CPL_4-15232 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1312-augustus_masked-CPR_4-17189 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1313-augustus_masked-CPR_4-17852 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1314-augustus_masked-YCB-8123 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |