Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1282-augustus_masked-BBM_6-7272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1283-augustus_masked-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1284-augustus_masked-APC_4-8186 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1285-augustus_masked-YCK-5146 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1286-augustus_masked-AMH_5-6613 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1287-augustus_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1288-augustus_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1289-augustus_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1290-augustus_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1291-augustus_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1292-augustus_masked-CPQ_4-15165 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1293-augustus_masked-AVB_8-8023 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1294-augustus_masked-AVB_8-8023 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1295-augustus_masked-YCB-8071 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1296-augustus_masked-YCB-8071 | NA | NA | NA | NA | Accessory | candidate HGT | Schizosaccharomyces sp. | S.mikatae / kudriavzevii / paradoxus |