Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1267-augustus_masked-CPN_4-15474 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1268-augustus_masked-CPN_4-15474 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1269-augustus_masked-BME_1-43277 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1270-augustus_masked-AHL_3-7774 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1271-augustus_masked-AHL_3-7774 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1272-augustus_masked-CPG_1-7611 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1273-augustus_masked-CPG_1-7611 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1274-augustus_masked-AIE_1-4858 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1275-augustus_masked-CPR_4-17794 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1276-augustus_masked-CPR_4-17794 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1277-augustus_masked-CPR_4-17794 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1278-augustus_masked-CPR_4-17794 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1279-augustus_masked-CPR_4-17794 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1280-augustus_masked-BBM_6-7272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1281-augustus_masked-BBM_6-7272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |