Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1252-augustus_masked-CDT_2-5272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1253-augustus_masked-CDT_2-5272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1254-augustus_masked-CGD_5-5246 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1255-augustus_masked-CGD_5-5246 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1256-augustus_masked-CGD_5-5246 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1257-augustus_masked-CGD_5-5246 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1258-augustus_masked-CPQ_4-15021 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1259-augustus_masked-CPQ_4-15021 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1260-augustus_masked-CPQ_4-15021 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1261-augustus_masked-CPQ_4-15021 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1262-augustus_masked-CPQ_4-15021 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1263-augustus_masked-CPQ_4-15021 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1264-augustus_masked-AID_2-6415 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1265-augustus_masked-AID_2-6415 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1266-augustus_masked-AID_2-6415 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |