Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1237-augustus_masked-CQS_4-6380 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1238-augustus_masked-AKM_4-5339 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1239-augustus_masked-CPA_4-16664 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1240-augustus_masked-ALI_5-15225 | NA | NA | NA | NA | Accessory | HGT | Lachancea sp. | Lachancea thermotolerans CBS 6340 chr C |
| 1241-augustus_masked-ALI_5-15225 | NA | NA | NA | NA | Accessory | HGT | Naumovozyma sp. | Lachancea thermotolerans CBS 6340 chr C |
| 1242-augustus_masked-ALI_5-15225 | NA | NA | NA | NA | Accessory | HGT | Ogatae Candida | Lachancea thermotolerans CBS 6340 chr C |
| 1243-augustus_masked-ACC_7-6008 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1244-augustus_masked-CGD_5-5416 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1245-augustus_masked-CGD_5-5416 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1246-augustus_masked-CGD_5-5416 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1247-augustus_masked-CGD_5-5416 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1248-augustus_masked-CCR_1-6225 | NA | NA | NA | NA | Accessory | candidate HGT | Babjeviella sp. | S. eubayanus mitochondrion / Lacahncea mitochondrion/ Torulaspora mitochondrion |
| 1249-augustus_masked-CPN_4-15474 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1250-augustus_masked-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1251-augustus_masked-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |