Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1222-augustus_masked-AQA_4-6966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1223-augustus_masked-AQA_4-6966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1224-augustus_masked-AQA_4-6966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1225-augustus_masked-AQA_4-6966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1226-augustus_masked-AQA_4-6966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1227-augustus_masked-CPM_4-14363 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1228-augustus_masked-CPM_4-14363 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1229-augustus_masked-CPM_4-14363 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1230-augustus_masked-ANA_5-7847 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1231-augustus_masked-AHL_3-7961 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1232-augustus_masked-AHL_3-7961 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1233-augustus_masked-CGD_5-5439 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1234-augustus_masked-CGD_5-5439 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1235-augustus_masked-CDE_2-5632 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1236-augustus_masked-CDE_2-5632 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |