Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 113-augustus_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 114-augustus_masked-1654-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 115-augustus_masked-1654-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 116-augustus_masked-1659-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 117-augustus_masked-1659-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 118-augustus_masked-1661-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 119-augustus_masked-1663-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 120-augustus_masked-1671-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 121-augustus_masked-1683-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 122-augustus_masked-1684-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 123-augustus_masked-1685-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 124-augustus_masked-1688-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 125-augustus_masked-1689-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 126-augustus_masked-1689-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 127-augustus_masked-1689-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |