Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1207-augustus_masked-BIF_1-6636 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1208-augustus_masked-BIF_1-6636 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1209-augustus_masked-YCB-7953 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1210-augustus_masked-BTE_3-67763 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1211-augustus_masked-CGP_5-11818 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1212-augustus_masked-BCG_8-12612 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1213-augustus_masked-BRK_4-4809 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1214-augustus_masked-BRK_4-4809 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1215-augustus_masked-BRK_4-4809 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1216-augustus_masked-BRK_4-4809 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1217-augustus_masked-BRK_4-4809 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1218-augustus_masked-CCQ_1-5816 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1219-augustus_masked-YBR-7284 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1220-augustus_masked-YBR-7284 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1221-augustus_masked-AQA_4-6966 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |