Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1190-augustus_masked-AHL_3-8001 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1191-augustus_masked-CPI_4-15732 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1192-augustus_masked-CPI_4-15732 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1193-augustus_masked-CPI_4-15732 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1196-augustus_masked-AVB_8-8059 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1197-augustus_masked-AVB_8-8059 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1198-augustus_masked-BTG_3-6441 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1199-augustus_masked-BTG_3-6441 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1200-augustus_masked-BTG_3-6441 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1201-augustus_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | candidate HGT | Pichia | Naumovozyma dairenensis (HE580272.1) |
| 1202-augustus_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1203-augustus_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | candidate HGT | Kluvyeromyces | Naumovozyma dairenensis (HE580272.1) |
| 1204-augustus_masked-CPA_4-16639 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1205-augustus_masked-CGH_5-16625 | YSC0047 | BIO1 | YAR070W-A | Putative pimeloyl-CoA synthetase involved in biotin biosynthesis; highly degraded pseudogenic paralog of YJR154W; functional copies present in S. cerevisiae strains YJM627 and A364a; functional pimeloyl-CoA synthetase (PCAS) genes are homologs of the bioW gene in Bacillus sp. and the bioC-bioH complex of E. coli | Accessory | Ancestral | NA | NA |
| 1206-augustus_masked-CGH_5-16625 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |