Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1175-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1176-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1177-augustus_masked-AVB_8-7958 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1178-augustus_masked-AVB_8-7958 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1179-augustus_masked-AVB_8-7958 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1180-augustus_masked-AQA_4-7249 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1181-augustus_masked-AMM_4-6867 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1182-augustus_masked-ALI_5-15258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1183-augustus_masked-ALI_5-15258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1184-augustus_masked-ALI_5-15258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1185-augustus_masked-CNI_4-19788 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1186-augustus_masked-CNI_4-19788 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1187-augustus_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1188-augustus_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1189-augustus_masked-AHF_3-9612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |