Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1160-augustus_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1161-augustus_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1162-augustus_masked-YAW-6840 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1163-augustus_masked-YAW-6840 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1164-augustus_masked-YAW-6840 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1165-augustus_masked-YAW-6840 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1166-augustus_masked-CLL_4-5918 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1167-augustus_masked-CQS_4-6124 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1168-augustus_masked-CQS_4-6124 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1169-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1170-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1171-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1172-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1173-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1174-augustus_masked-CPR_4-17889 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |