Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1145-augustus_masked-ASV_1-19156 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1146-augustus_masked-AMH_5-6645 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1147-augustus_masked-AMH_5-6645 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1148-augustus_masked-AMH_5-6645 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1149-augustus_masked-AMH_5-6645 | NA | NA | NA | NA | Accessory | Introgression | UNKNOWN SOURCE | NA |
| 1150-augustus_masked-AHM_1-7118 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1151-augustus_masked-AHM_1-7118 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1152-augustus_masked-AHM_1-7118 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1153-augustus_masked-CQS_4-6133 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1154-augustus_masked-YAC-7672 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1155-augustus_masked-CGD_5-5436 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1156-augustus_masked-CGD_5-5436 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1157-augustus_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1158-augustus_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1159-augustus_masked-ABP_6-5400 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |