Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1130-augustus_masked-AQA_4-7340 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1131-augustus_masked-CPA_4-16706 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1132-augustus_masked-BBM_6-7267 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1133-augustus_masked-CGE_5-5798 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1134-augustus_masked-CGE_5-5798 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1135-augustus_masked-CGE_5-5798 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1136-augustus_masked-AVQ_5-51269 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1137-augustus_masked-CQS_4-6376 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1138-augustus_masked-CPL_4-15430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1139-augustus_masked-CPL_4-15430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1140-augustus_masked-CPL_4-15430 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1141-augustus_masked-AVB_8-8060 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1142-augustus_masked-AVB_8-8060 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1143-augustus_masked-AVB_8-8060 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1144-augustus_masked-CPS_4-19257 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |