Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1115-augustus_masked-CPN_4-15722 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1116-augustus_masked-ACQ_8-5020 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1117-augustus_masked-CPR_4-17369 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1118-augustus_masked-CPR_4-17369 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1119-augustus_masked-CPN_4-15176 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1120-augustus_masked-CPN_4-15176 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1121-augustus_masked-CPN_4-15176 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1122-augustus_masked-CPN_4-15176 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1123-augustus_masked-CPR_4-17651 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1124-augustus_masked-CPI_4-15424 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1125-augustus_masked-BBM_6-7238 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1126-augustus_masked-APS_4-8484 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1127-augustus_masked-APS_4-8484 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1128-augustus_masked-CPA_4-16961 | NA | NA | NA | NA | Accessory | candidate HGT | Vanderwaltozyma | NA |
| 1129-augustus_masked-CFI_4-63651 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |