Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1100-augustus_masked-CQS_4-6414 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1101-augustus_masked-CQS_4-6414 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1102-augustus_masked-ANR_2-7082 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1103-augustus_masked-BVC_6-19502 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1104-augustus_masked-YAC-7642 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1105-augustus_masked-AEN_3-18383 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1106-augustus_masked-CPL_4-15634 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1107-augustus_masked-AFA_4-7928 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1108-augustus_masked-CPN_4-15722 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1109-augustus_masked-CEI_2-8657 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1110-augustus_masked-YAE-4724 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1111-augustus_masked-AKQ_5-5823 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1112-augustus_masked-BAH_6-7313 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1113-augustus_masked-CPN_4-15722 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1114-augustus_masked-CPN_4-15722 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |