Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1085-augustus_masked-BEE_6-12017 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1086-augustus_masked-BEE_6-12017 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1087-augustus_masked-CDT_2-5278 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1088-augustus_masked-CDT_2-5278 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1089-augustus_masked-CDT_2-5278 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1090-augustus_masked-CDT_2-5278 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1091-augustus_masked-AIE_1-5054 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1092-augustus_masked-AIE_1-5054 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1093-augustus_masked-AIE_1-5054 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1094-augustus_masked-AIE_1-5054 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1095-augustus_masked-AQA_4-7086 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1096-augustus_masked-AQA_4-7086 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1097-augustus_masked-AQA_4-7086 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1098-augustus_masked-CQS_4-6414 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1099-augustus_masked-CQS_4-6414 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |