Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1070-augustus_masked-YCB-8168 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1071-augustus_masked-AKD_2-9730 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1072-augustus_masked-CPA_4-16548 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1073-augustus_masked-BBM_6-7244 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1074-augustus_masked-BMV_2-11488 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1075-augustus_masked-AEL_3-25454 | NA | NA | NA | NA | Accessory | HGT | Candida | Naumovozyma dairenensis CBS 421 chromosome 11 |
| 1076-augustus_masked-AHL_3-7997 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1077-augustus_masked-AHL_3-7997 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1078-augustus_masked-AHL_3-7997 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1079-augustus_masked-AHL_3-7997 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1080-augustus_masked-AHL_3-7997 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1081-augustus_masked-ALI_5-15120 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1082-augustus_masked-ALI_5-15120 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1083-augustus_masked-BPL_2-7584 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1084-augustus_masked-BEE_6-12017 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |