Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 98-augustus_masked-1375-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 99-augustus_masked-1375-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 100-augustus_masked-1375-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 101-augustus_masked-1375-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 102-augustus_masked-1433-AAT_3 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 103-augustus_masked-1449-AAT_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 104-augustus_masked-1452-AAT_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 105-augustus_masked-1454-AAT_3 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 106-augustus_masked-1568-CBK_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 107-augustus_masked-1645-AQT_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 108-augustus_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 109-augustus_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 110-augustus_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 111-augustus_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 112-augustus_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |