Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1054-augustus_masked-BRK_4-4772 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1055-augustus_masked-BRK_4-4772 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1056-augustus_masked-BRK_4-4772 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1057-augustus_masked-BRK_4-4772 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1058-augustus_masked-AHF_3-9619 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1059-augustus_masked-AHF_3-9619 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1060-augustus_masked-ASN_8-20595 | NA | NA | NA | NA | Accessory | candidate HGT | Spathaspora Cephaloascus | S. eubayanus/ kudriavzevii / paradoxus |
| 1061-augustus_masked-BCB_3-14860 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1062-augustus_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1063-augustus_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1064-augustus_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1065-augustus_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1066-augustus_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1067-augustus_masked-CMG_6-37743 | NA | NA | NA | NA | Accessory | Introgression | S. mikatae | NA |
| 1068-augustus_masked-BIN_3-306 | NA | NA | NA | NA | Accessory | NA | NA | NA |