Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1039-augustus_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1040-augustus_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1041-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1042-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1043-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1044-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1045-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1046-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1047-augustus_masked-AQD_4-6895 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1048-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1049-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1050-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1051-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1052-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1053-augustus_masked-CQS_4-6442 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |