Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1024-augustus_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Naumovozyma castelli/ candida glabrata / S. eubayanus/Vanderwaltozyma polyspora / Z. rouxii / T. delbrueckii |
| 1025-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1026-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1027-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1028-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1029-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1030-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1031-augustus_masked-CPQ_4-15294 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1032-augustus_masked-BCH_5-11150 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1033-augustus_masked-BCH_5-11150 | NA | NA | NA | NA | Accessory | Unknown | S. mikatae | NA |
| 1034-augustus_masked-CPM_4-14876 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1035-augustus_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1036-augustus_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1037-augustus_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1038-augustus_masked-CNP_1-20000 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |