Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1008-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1009-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1010-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1011-augustus_masked-CGH_5-16559 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1012-augustus_masked-CEG_4-7368 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1013-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1014-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1015-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1016-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1017-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1018-augustus_masked-AID_2-6438 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1019-augustus_masked-CQS_4-6404 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1021-augustus_masked-ABL_5-5062 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1022-augustus_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | HGT | Schizosaccharomyces sp. | Xylona heveae /Talaromyces atroroseus |
| 1023-augustus_masked-AHG_3-5017 | NA | NA | NA | NA | Accessory | HGT | NA | Torulaspora delbrueckii NRRL Y-50541 chr4/Vanderwaltozyma polyspora |