Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 993-augustus_masked-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 994-augustus_masked-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 995-augustus_masked-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 996-augustus_masked-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 997-augustus_masked-AIE_1-5046 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 998-augustus_masked-BBM_6-7272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 999-augustus_masked-CGE_5-5812 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1000-augustus_masked-CGE_5-5812 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1001-augustus_masked-CGE_5-5812 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1002-augustus_masked-CGE_5-5812 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1003-augustus_masked-YCM-7680 | NA | NA | NA | NA | Accessory | candidate HGT | Torulaspora sp. | Torulaspora delbrueckii CBS 1146 chr 2 |
| 1004-augustus_masked-YCM-7680 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1005-augustus_masked-YCM-7680 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1006-augustus_masked-YCM-7680 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1007-augustus_masked-YCM-7680 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |