Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 978-augustus_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 979-augustus_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 980-augustus_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 981-augustus_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 982-augustus_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 983-augustus_masked-BCD_8-12448 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 984-augustus_masked-CPA_4-16622 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 985-augustus_masked-BBT_3-41436 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 986-augustus_masked-ASB_2-40154 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 987-augustus_masked-YBT-11417 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 988-augustus_masked-CPR_4-17842 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 989-augustus_masked-BQN_4-5641 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 990-augustus_masked-BQN_4-5641 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 991-augustus_masked-BQN_4-5641 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 992-augustus_masked-ABM_5-4637 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |