Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 963-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 964-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 965-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 966-augustus_masked-CPS_4-19273 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 967-augustus_masked-BBM_6-7211 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 968-augustus_masked-BBM_6-7211 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 969-augustus_masked-BBM_6-7237 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 970-augustus_masked-BDP_5-11433 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 971-augustus_masked-BBM_6-6977 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 972-augustus_masked-BBM_6-6977 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 973-augustus_masked-YBR-7258 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 974-augustus_masked-YBR-7258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 975-augustus_masked-YBR-7258 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 976-augustus_masked-ABL_5-5194 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 977-augustus_masked-BGM_1-17021 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |