Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 948-augustus_masked-AID_2-6456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 949-augustus_masked-AID_2-6456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 950-augustus_masked-AID_2-6456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 951-augustus_masked-AQH_2-38595 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 952-augustus_masked-APG_4-6739 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 953-augustus_masked-YDG-6389 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 954-augustus_masked-AID_2-6449 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 955-augustus_masked-AID_2-6449 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 956-augustus_masked-AID_2-6449 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 957-augustus_masked-CGE_5-5798 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 958-augustus_masked-CGE_5-5798 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 959-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 960-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 961-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 962-augustus_masked-ABM_5-4457 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |