Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 933-augustus_masked-CCL_1-7511 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 934-augustus_masked-BAL_7-7123 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 935-augustus_masked-BAL_7-7123 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 936-augustus_masked-AVB_8-7811 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 937-augustus_masked-AHM_1-7082 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 938-augustus_masked-AHM_1-7082 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 939-augustus_masked-AQD_4-6616 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 940-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 941-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Torulaspora delbrueckii CBS 1146 chr3 |
| 942-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Torulaspora delbrueckii CBS 1146 chr3 |
| 943-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Torulaspora delbrueckii CBS 1146 chr3 |
| 944-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 945-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 946-augustus_masked-BDG_5-19334 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr8 |
| 947-augustus_masked-BDM_5-23055 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |