Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 918-augustus_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 919-augustus_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 920-augustus_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 921-augustus_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 922-augustus_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 923-augustus_masked-AHL_3-7762 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 924-augustus_masked-AQD_4-6879 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 925-augustus_masked-AHM_1-7114 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 926-augustus_masked-AHM_1-7114 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 927-augustus_masked-AHM_1-7114 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 928-augustus_masked-YDM-5008 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 929-augustus_masked-YDM-5008 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 930-augustus_masked-ADV_4-6333 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 931-augustus_masked-CQS_4-6447 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 932-augustus_masked-BAP_7-7168 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |