Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 83-augustus_masked-12212-ALI_5 | NA | NA | NA | NA | Accessory | HGT | Wickerharmomyces/Candida | Lachancea thermotolerans CBS 6340 chr C |
| 84-augustus_masked-12212-ALI_5 | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | Lachancea thermotolerans CBS 6340 chr C |
| 85-augustus_masked-12217-ALI_5 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 86-augustus_masked-1224-ANM_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 87-augustus_masked-125-YCE | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 88-augustus_masked-125-YCE | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 89-augustus_masked-125-YCE | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 90-augustus_masked-1265-AHB_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 91-augustus_masked-1266-AHB_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 92-augustus_masked-1266-AHB_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 93-augustus_masked-1266-AHB_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 94-augustus_masked-1285-AHB_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 95-augustus_masked-1364-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 96-augustus_masked-1372-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 97-augustus_masked-1375-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |