Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 903-augustus_masked-BIL_3-4712 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 904-augustus_masked-BIL_3-4712 | NA | NA | NA | NA | Accessory | candidate HGT | Candida | Kazachstania africana CBS 2517 chr 3 / Z.rouxii/ parabailii |
| 905-augustus_masked-BIL_3-4712 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 906-augustus_masked-BIL_3-4712 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 907-augustus_masked-BAI_7-6404 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 908-augustus_masked-ABL_5-5136 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 909-augustus_masked-AHL_3-7778 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 910-augustus_masked-YDM-5301 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 911-augustus_masked-CPN_4-15139 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 912-augustus_masked-CET_4-8395 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 913-augustus_masked-CET_4-8395 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 914-augustus_masked-BDM_5-23167 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 915-augustus_masked-AQA_4-7308 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 916-augustus_masked-AMM_4-6587 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 917-augustus_masked-BPP_4-5588 | NA | NA | NA | NA | Accessory | candidate HGT | Torulaspora sp. | Torulaspora delbrueckii CBS 1146 chr 7 |