Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 888-augustus_masked-AVB_8-8057 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 889-augustus_masked-CPM_4-14876 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 890-augustus_masked-CPM_4-14876 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 891-augustus_masked-CPM_4-14876 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 892-augustus_masked-AIE_1-5069 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 893-augustus_masked-AIE_1-5069 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 894-augustus_masked-AIE_1-5069 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 895-augustus_masked-AIE_1-5069 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 896-augustus_masked-AIE_1-5069 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 897-augustus_masked-ABD_5-6706 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 898-augustus_masked-CPN_4-15085 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 899-augustus_masked-CPN_4-15085 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 900-augustus_masked-CPN_4-15553 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 901-augustus_masked-CPN_4-15553 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 902-augustus_masked-BIL_3-4712 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |