Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 873-augustus_masked-YCC-11519 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 874-augustus_masked-YCC-11519 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 875-augustus_masked-YCC-11519 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 876-augustus_masked-YCC-11519 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 877-augustus_masked-YCC-11519 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 878-augustus_masked-AVB_8-7811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 879-augustus_masked-AVB_8-7811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 880-augustus_masked-AVB_8-7811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 881-augustus_masked-AVB_8-7811 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 882-augustus_masked-YDG-6444 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 883-augustus_masked-AVB_8-7764 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 884-augustus_masked-AVB_8-7764 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 885-augustus_masked-AVB_8-7764 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 886-augustus_masked-AVB_8-7764 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 887-augustus_masked-CGL_4-10494 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |