Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 858-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 859-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 860-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 861-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 862-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 863-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 864-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 865-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 866-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 867-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 868-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 869-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 870-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 871-augustus_masked-CPN_4-15612 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 872-augustus_masked-CGE_5-5752 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |